PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001344G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 325aa    MW: 34363.8 Da    PI: 7.5695
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001344G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32161214255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PH01001344G0260 161 PRMRWTSTLHARFVHAVELLGGHDRATPKAVLELMDVKDLTLAHVKSHLQMYRT 214
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-29158215IPR009057Homeodomain-like
SuperFamilySSF466891.09E-15159215IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-24161214IPR006447Myb domain, plants
PfamPF002495.3E-7162213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELFPSQPNL SLQIGLPSSA TPHGHGHDHH HAALNARFFA PPSTSSSGNP AMAPSMPLPL  60
PMPVPMPMPP SAAGAGHGAG LYYHPHPHPD GAMLRAIRGV PLYQNAGPPF MAPPPPLPPH  120
GAAAAPCYCE PCHVGGAWRR MGCSAGGARG GLPAKRAARA PRMRWTSTLH ARFVHAVELL  180
GGHDRATPKA VLELMDVKDL TLAHVKSHLQ MYRTVKNTER PAASSDQADG FEGGSAGEIC  240
DDNSLDLHGG GGGRPEAAAR HGREDWPGFP SESNNGSMQS FKDHMQSKSL EILSDMNSSC  300
VSETTSSASE LNLEFTLGRP HHRPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16162216357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16162216357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16162216357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16162216357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001344G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956890.0FP095689.1 Phyllostachys edulis cDNA clone: bphylf026d19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821360.11e-141probable transcription factor KAN2 isoform X2
TrEMBLA0A3L6PS851e-144A0A3L6PS85_PANMI; Putative transcription factor RL9 isoform X1
STRINGMLOC_73347.21e-140(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-37G2-like family protein