PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001338G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 642aa    MW: 67411.6 Da    PI: 7.187
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001338G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2391.9e-12314370155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  PH01001338G0140 314 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 370
                      78*******************77776664346655.77******************98 PP
2AP236.71.1e-11402447755
              AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      r++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  PH01001338G0140 402 RRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 447
                      8999********999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-17314378No hitNo description
SuperFamilySSF541712.48E-14314379IPR016177DNA-binding domain
PfamPF008471.1E-9314370IPR001471AP2/ERF domain
PROSITE profilePS5103217.359315378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12315379IPR001471AP2/ERF domain
SMARTSM003808.3E-23315384IPR001471AP2/ERF domain
PRINTSPR003673.7E-6316327IPR001471AP2/ERF domain
PROSITE profilePS5103216.647396455IPR001471AP2/ERF domain
PfamPF008474.6E-7402447IPR001471AP2/ERF domain
SMARTSM003805.9E-27402461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15403455IPR001471AP2/ERF domain
CDDcd000184.71E-20403457No hitNo description
SuperFamilySSF541719.15E-15403456IPR016177DNA-binding domain
PRINTSPR003673.7E-6437457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MTNHSSSSSS QDISGSIAAG GSWLGFSLSP HMAAAPLDAA AGSNVDVGGH HVQQQQHYGG  60
LFFPPAAAVT SSSTSFCYGA LGGGHDNVAA ANGGYYSGLS MPLKSDGSLC IMEALRRNEQ  120
EHHGVVVSAS PKLEDFLGAG PAMALSLDNS SFYYGGHGQD HGAGGAPHHG GFLQPLHCAV  180
IPGAGVHDVY GRAHAHAHAA LVDEQSAAAA MAAAGWVARG AGGYDTGNGE DGGCASTIMP  240
AHAAGHLHPL TLSMSSRSQS SCVTMQAAAN GHAGAGGEYM AMDGTSKKRG TDRGGQNKQP  300
VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG YDMEEKAARA  360
YDLAALKYWG PSTHINFPLE DYQEELPQMK NMTRQEYVAH LRRHHQHGRW QARIGRVSGN  420
KDLYLGTFST QEEAAEAYDV AAIKFRGLNA VTNFDITRYD VDKIMASNTL LPSELARRKK  480
DNYAAAAMTE SAAVANAAAA LMQAGNATDW KVAAPLPATR TGTPWSDGHS HHHDLLSSEA  540
FSVLHDIQSV DAVTAGADAD SAHGNTSTHM SNASSLATSL SNSREQSPDR GGGLAMLFAK  600
PAASKLASPL PLGSWVSSSP LPTRPGVSIA HMPLFAAWTD A*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001338G0140
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-159CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-109AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]