PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001325G0370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | E2F/DP | ||||||||
Protein Properties | Length: 249aa MW: 27409.6 Da PI: 10.8643 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 67.3 | 2e-21 | 115 | 175 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+ne ++ d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg PH01001325G0370 115 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 175 689*******...*****999******9..566...8899********************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.6E-10 | 110 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.8E-25 | 113 | 175 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.0E-19 | 116 | 175 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-16 | 116 | 176 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-22 | 139 | 181 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01138 | 0.0071 | 182 | 247 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.02E-10 | 182 | 235 | No hit | No description |
Pfam | PF08781 | 8.8E-6 | 183 | 235 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVSGTRTSGG AALSASTSGG SAGSPPRRPA AGAGGLGLGL HAGQREHRCP PPQQPRHPGR 60 RRAIVAARRE IWLMRSGVAC GDLNCRALAM EEVVREMRCK KKKRGTRIVG PDKGGRGLRQ 120 FSMKVCEKVE SKGRTTYNEQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS 180 MDDIEELKTE LIGLKGRLDK KSTYLQELQD QRNEQLYGSG NAPSGGVALP FILVQPLWSF 240 IVGRRTLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-28 | 112 | 180 | 6 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001325G0370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240989 | 3e-70 | AK240989.1 Oryza sativa Japonica Group cDNA, clone: J065051E11, full insert sequence. | |||
GenBank | AK287809 | 3e-70 | AK287809.1 Oryza sativa Japonica Group cDNA, clone: J065179H06, full insert sequence. | |||
GenBank | AY224551 | 3e-70 | AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169170.1 | 4e-80 | Transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 2e-69 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0D9Z267 | 8e-81 | A0A0D9Z267_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G03940.1 | 1e-80 | (Oryza glumipatula) | ||||
STRING | OMERI03G03770.1 | 2e-81 | (Oryza meridionalis) | ||||
STRING | ORUFI03G03750.1 | 2e-81 | (Oryza rufipogon) | ||||
STRING | ONIVA03G03810.1 | 2e-80 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 4e-72 | Transcription factor DP |