PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001317G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 488aa    MW: 52964.9 Da    PI: 7.6196
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001317G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.8e-102045227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C f++rtG C +G+rC+++H++
  PH01001317G0380 20 GEADCVFYLRTGACGFGERCRYNHPR 45
                     6789********************96 PP
2zf-CCCH391.3e-126994227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C ++++tGtCk+G++Ck++H++
  PH01001317G0380 69 GQPVCEYYMKTGTCKFGSNCKYHHPK 94
                     6799********************96 PP
3zf-CCCH39.87.5e-13114139227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G++CkF+H++
  PH01001317G0380 114 GEKECSYYMKTGQCKFGSTCKFHHPE 139
                      7899********************96 PP
4zf-CCCH39.96.9e-13269295127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++Cr+++rtG Ck+G++Ck++H++
  PH01001317G0380 269 PGQPECRYYMRTGDCKFGATCKYNHPR 295
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8641846IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-61845IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-72045IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-52346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-42445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.3146795IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-86794IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-106994IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-77096IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-67296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812112140IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6112139IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10114139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4118138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676268296IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6268295IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5272296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4274295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MWRLGLGGEG DAARLPERSG EADCVFYLRT GACGFGERCR YNHPRDRGGT EFGEGAKNAA  60
ASDYPERSGQ PVCEYYMKTG TCKFGSNCKY HHPKQDGSVQ PVMLNSGGFP LRPGEKECSY  120
YMKTGQCKFG STCKFHHPEF GGVPVTPGIY PPLQSSSVPP PHPYAPLANW QMGRPPAPVV  180
PGSYMPGSYT PMMLSSGMIP LHGWSPYPAS VNPVASAGAQ QTVQAGPVYG IGHHGSSSTI  240
AYGGPYMPYS SSTGQSSNNQ QEHGFPERPG QPECRYYMRT GDCKFGATCK YNHPRDWSAP  300
KSNYVVSPLC LPLRLHIKEI TNQKCLSSIY AGEPVCGPHP LDNPRELGQV SAASTTQLPA  360
LVPAFLGGAR SIPKPGLYDD VDDEFPSGDP LHQPGAEVCV VPMTPAMRDM ECCLQRALIV  420
WVGKTRPVVS VQQVSQAFIS ERDLPVSSLS IHPFYHENFL VVFDSNSTKD HILQADSIAT  480
SRFHLLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001317G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A446NCT80.0A0A446NCT8_TRITD; Uncharacterized protein
TrEMBLM8A1150.0M8A115_TRIUA; Zinc finger CCCH domain-containing protein 6
STRINGTRIUR3_35231-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-100C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]