PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001309G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 293aa    MW: 33101.5 Da    PI: 8.0095
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001309G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.39.1e-51111441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                      lppGfrFhP+d+elv +yL +k++g         +  + ++ +vd++kvePwdLp+ +  + kewyf+s rd+kyatg+r+nrat+sgyWkatg
  PH01001309G0120  11 LPPGFRFHPRDDELVLDYLSRKLSGGGgggavvsIYGFPTMVDVDLNKVEPWDLPEIACVGGKEWYFYSLRDRKYATGQRTNRATESGYWKATG 104
                      79**********************999888875433344799*************7666689******************************** PP

              NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      kd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r 
  PH01001309G0120 105 KDRPISR-KGLLVGMRKTLVFYQGRAPKGNKTEWVMHEFRK 144
                      *****99.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-584167IPR003441NAC domain
PROSITE profilePS5100554.97511167IPR003441NAC domain
PfamPF023652.4E-2512143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNSLNMVEAR LPPGFRFHPR DDELVLDYLS RKLSGGGGGG AVVSIYGFPT MVDVDLNKVE  60
PWDLPEIACV GGKEWYFYSL RDRKYATGQR TNRATESGYW KATGKDRPIS RKGLLVGMRK  120
TLVFYQGRAP KGNKTEWVMH EFRKEGQGDP MKLPFKEDWV LCRVFYKSRA TIAKPPTESS  180
YNIDSAAATS LPPLIDNFIA FDQPRPVQNL EGYEQVPCFS NNPSQPSSSM NVPLTSPMVD  240
QEQYMGKAIK DVLSQFTRFE GNVKREAPQS NFAQDGFEYL AESGFSQMWN SLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49716811169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001309G0120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954910.0FP095491.1 Phyllostachys edulis cDNA clone: bphyem108o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563412.10.0NAC domain-containing protein 21/22
SwissprotQ84TE62e-87NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0Q1K00.0A0A0E0Q1K0_ORYRU; Uncharacterized protein
TrEMBLA2YG540.0A2YG54_ORYSI; Uncharacterized protein
STRINGPavir.J36955.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-86NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]