PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001303G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 132aa    MW: 14928 Da    PI: 10.5553
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001303G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-274291251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye++s
  PH01001303G0110 42 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAEVALVVFSPAGRLYEFAS 91
                     8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-343392IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.5013393IPR002100Transcription factor, MADS-box
CDDcd002652.46E-3535103No hitNo description
PRINTSPR004044.3E-293555IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-3035113IPR002100Transcription factor, MADS-box
PfamPF003193.4E-274289IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-295570IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-297091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEGENVVGRR SVQAAAAGQE GEEGGMTKHK VKRKRGRVEL RRIEDRTSRQ VRFSKRRSGL  60
FKKAYELSVL CDAEVALVVF SPAGRLYEFA SSNSSIEKIF GRYWDIPNTT NHLNIEARDS  120
RVDCKIQVKH M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-1935103369Myocyte-specific enhancer factor 2B
1tqe_Q9e-1935103369Myocyte-specific enhancer factor 2B
1tqe_R9e-1935103369Myocyte-specific enhancer factor 2B
1tqe_S9e-1935103369Myocyte-specific enhancer factor 2B
6c9l_A9e-1935103369Myocyte-specific enhancer factor 2B
6c9l_B9e-1935103369Myocyte-specific enhancer factor 2B
6c9l_C9e-1935103369Myocyte-specific enhancer factor 2B
6c9l_D9e-1935103369Myocyte-specific enhancer factor 2B
6c9l_E9e-1935103369Myocyte-specific enhancer factor 2B
6c9l_F9e-1935103369Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12736KHKVKRKRGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001303G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820080.12e-57MADS-box transcription factor 51-like isoform X1
RefseqXP_025820081.12e-57MADS-box transcription factor 51-like isoform X1
SwissprotQ9XJ614e-30MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A3Q8C2Q71e-63A0A3Q8C2Q7_9POAL; MADS37-2
STRINGSi015525m2e-53(Setaria italica)
STRINGSb07g026180.12e-53(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-29AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]