PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001297G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 302aa    MW: 31359.8 Da    PI: 10.2803
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001297G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.5e-06103128227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     C  G++C+FaHg+
  PH01001297G0270 103 KTRMCNKYNTAEGCTWGNKCHFAHGE 128
                      89**********************96 PP
2zf-CCCH375.8e-12267292127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  PH01001297G0270 267 FKTKLCENFNK-GSCTFGDRCRFAHGE 292
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-44661IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.3855063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-1399133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8100132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.07101129IPR000571Zinc finger, CCCH-type
SMARTSM003562.1101128IPR000571Zinc finger, CCCH-type
SMARTSM003222.0E-11171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.4E-16171240IPR004088K Homology domain, type 1
PROSITE profilePS5008414.802172236IPR004088K Homology domain, type 1
PfamPF000139.6E-12174238IPR004088K Homology domain, type 1
CDDcd001058.50E-14174237No hitNo description
SuperFamilySSF547914.24E-15174268IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.108.8E-17264298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-9266297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.685266293IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-8266292IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9267292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDAGRKRGAP EGANGAGAGG GAKRARGSVL TTNLQYYVKL EIPLANTAGC PFGASCHFLH  60
NFPGGYQAVA KMTNLGGLAI AAPPGRMPMG RVVPDGPPTS TVKTRMCNKY NTAEGCTWGN  120
KCHFAHGERE LGKPMRLNNS MAPPMAPRPN GHFEPLPMPG PDMVPSSTFG ASATAKISVD  180
ASLAGAIIGK GGANTKHISR MTGAKLAIRD NEGDPNLKNI ELEGTFDQIK HASTMVKELI  240
VRIGGNAPPS AKNPARGSHA GGPGSNFKTK LCENFNKGSC TFGDRCRFAH GESELRKPAA  300
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001297G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914800.0FP091480.1 Phyllostachys edulis cDNA clone: bphyem209p22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227497.11e-164zinc finger CCCH domain-containing protein 44 isoform X1
SwissprotQ69XQ31e-158C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLI1GXA21e-163I1GXA2_BRADI; Uncharacterized protein
STRINGBRADI1G35920.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-60C3H family protein