PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001288G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 419aa    MW: 44728.9 Da    PI: 6.5049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001288G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043339359323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F  k + ++H +++
  PH01001288G0520 339 CRKCGKAFAVKGDWRTHEKNC 359
                      *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.88E-6319357No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5324357IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621337357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MESPYTSFFK NHHHRRYYFP AAPAPAAPPL SAYSIPFFTT PPQPPAPTPP AGPPSPPLRE  60
ALPLLSLTPA SRSLQEQQHG PESDGDGDDE EEEVPGPASS NSHQQRAGRL FADLNSKAPG  120
DPMDVEGGSG AAAGDVTVAL HIGLPSAGAA DLISGLSTGR AAQEEEDEDD DGRESGGGGG  180
GGRSAARVPV DANREAEQGA VLDPDAVADP HRPDAVLLPR LLQNLQPIQQ HAVTFFPSSF  240
ASLEEATLTM KQTVLPLVSL GLASHVKEEM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY  300
CCSPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG  360
KLWYCLCGSE FKHKRSLKDH ARAFGHGHGA LGCNGGLDED DDGAVSDIEH DGGAARSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001288G0520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.11e-115zinc finger protein WIP2-like
TrEMBLA0A3B6KKB21e-115A0A3B6KKB2_WHEAT; Uncharacterized protein
TrEMBLA0A446T6G61e-115A0A446T6G6_TRITD; Uncharacterized protein
STRINGPavir.Fa00506.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-79C2H2 family protein