PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001285G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 604aa    MW: 65369.2 Da    PI: 7.4825
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001285G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-171101733499
                      SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++ +d +  sW++ +iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++el+v+++r+
  PH01001285G0430 110 SAVVTKDVHEASWKFWHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RGDGGELHVGIRRA 173
                      3577789*******************************************..448999******97 PP
2Auxin_resp68.22.8e-232142603883
       Auxin_resp  38 kvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      k+++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  PH01001285G0430 214 KWCPGMRFKMAFETEDSSRISWfMGTVSGVQVTDPIRWPQSPWRLLQ 260
                      8********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-1790174IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-1593172No hitNo description
SMARTSM010193.2E-1194174IPR003340B3 DNA binding domain
PfamPF023623.9E-15109173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-19112175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.532112174IPR003340B3 DNA binding domain
PfamPF065073.2E-18214260IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MRTVPPVGSS VYYFPQGHAE HALGLAAGAD LSAARVPALV PCRVAAVRYM ADPDTDEVFA  60
RIRLVPLRTA DSEAEREDDG AGAANEEQEK PASFAKTLTQ SDANNGGGFS AVVTKDVHEA  120
SWKFWHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR GDGGELHVGI RRAKRGFCGA  180
GGGGEEASMP GWDQYAGLTR GNVSPCGAAK GRGKWCPGMR FKMAFETEDS SRISWFMGTV  240
SGVQVTDPIR WPQSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSTMPAIH LASFSSPRKK  300
PRIPAYPEFP FEGQLLNPAF PPNPLANGHH HHYHHNQSNH PSLFPFPNGS APAGIQGARH  360
AQFGPSLSDL HPTHLQSSLM YRGLRRPDHV SPTPIPPRVS TDLTIGSPPA REGVSCALSI  420
GTKKTGDLKP PGLVLFGQTI LTEQQMSLSN SAGVTSPAAT GNSSLNWNTE KGANVSEGSG  480
SGVIQNSSPT DNTSSERLQW FGDNSQNSEF GLEPGQCKVF IESDTVGRNL DLSALSSFEE  540
LYGRLSEMFC IDSAELRSRV LYRGAFSEFI KSARRLTILT DAGSDNLGSW RATEQANREQ  600
ASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-52428166388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001285G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0934900.0FP093490.1 Phyllostachys edulis cDNA clone: bphyem105i18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0E0K2M20.0A0A0E0K2M2_ORYPU; Auxin response factor
STRINGOPUNC02G22610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-120auxin response factor 16