PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001253G0390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 172aa MW: 18933.7 Da PI: 10.591 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.7 | 1e-15 | 89 | 125 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ PH01001253G0390 89 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 125 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 13.493 | 18 | 60 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.6E-16 | 18 | 58 | IPR010402 | CCT domain |
SMART | SM00401 | 2.3E-10 | 83 | 137 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-11 | 86 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.7E-14 | 87 | 127 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.52E-12 | 89 | 135 | No hit | No description |
Pfam | PF00320 | 1.8E-13 | 89 | 125 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 89 | 116 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAVPNAYDEK STTVAARRVA SLMRFREKRK ERCFDKKIRY SVRKEVAQKM KRRKGQFAGR 60 AHFGDGACSS AACGSPANGE DDHFRETHCQ NCGISSRLTP AMRRGPAGPR SLCNACGLMW 120 ANKGTLRSPL NAPKMTLQHP ANLSKMGDTD NNKAILHAEH NQATIKIDSE M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001253G0390 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288076 | 1e-170 | AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651787.2 | 1e-112 | PREDICTED: GATA transcription factor 19 | ||||
Refseq | XP_015632019.1 | 1e-111 | GATA transcription factor 19 isoform X1 | ||||
Refseq | XP_015632020.1 | 1e-111 | GATA transcription factor 19 isoform X2 | ||||
Refseq | XP_015691252.1 | 1e-112 | PREDICTED: GATA transcription factor 19 | ||||
Swissprot | Q0DNU1 | 1e-112 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A0E0KIP9 | 1e-111 | A0A0E0KIP9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G30420.1 | 1e-112 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 1e-37 | ZIM-like 1 |