PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001246G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 450aa    MW: 48851.8 Da    PI: 5.3113
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001246G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.9e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  PH01001246G0150  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6*****************************657888888876 PP
2zf-B_box231.6e-074789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                      C+++ ++++   C + ++ lC++C  ++H g       H++++
  PH01001246G0150 47 LCDRCVSQPAAVRCLEENTSLCQKCDWNGH-GaaslaagHKRQT 89
                     7*****************************.5588888998876 PP
3CCT53.77.2e-19349387139
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGr 39 
                      R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGr
  PH01001246G0150 349 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGR 387
                      899***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000219.92E-8447No hitNo description
PROSITE profilePS501199.1014390IPR000315B-box-type zinc finger
CDDcd000218.56E-64790No hitNo description
SMARTSM003360.134890IPR000315B-box-type zinc finger
PfamPF062031.1E-13349387IPR010402CCT domain
PROSITE profilePS5101713.592349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVSQPAAVRC  60
LEENTSLCQK CDWNGHGAAS LAAGHKRQTI NCYSGCPSSA ELSRIWSFGM DIPTVAAEPN  120
CEEGISMMNI NDSGVSNHCG APEDSSLLDI ASTALMSDPP TGGKLEPLIG SSSGDGMDLL  180
PLATDQRAGP VSMAPKVPYV TDKEMFNDGS IYEDLYEDGA DLTFENYEEL FGTPHIQTEQ  240
LFDDAGIDSY FEMRELPAVD SSEQPKHMQP ECNAVSADPG MSNLGARVDS SLCIPARQAI  300
SSISLSFSGL TGESNAGDYQ DCGVSPMLLM GEPPWHPPGP EASLPGGSRD SALTRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRGWN VHLRLLMDEW FESLSTICAL IQYNYRGSSS  420
SSTHRMATVT ASAMVFGGAL PGWTSRYHD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001246G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627427.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_015627428.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
RefseqXP_025878659.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9LUA91e-108COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3S6H5M60.0A0A3S6H5M6_9POAL; Constans-like protein
STRINGOPUNC02G28370.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-87B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]