PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001239G0650

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

BES1

Protein Properties

Length: 608aa MW: 68799.8 Da PI: 5.5593

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001239G0650	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	124.1	1.8e-38	49	123	2	76
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 g +r++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+ + PH01001239G0650 49 GVRRSRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRARADINEVIAALAREAGWVVLPDGTTFPSSSQSQ 123 668899999************************************************************988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.7E-35	51	123	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	6.32E-185	136	573	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	6.6E-201	139	573	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.4E-110	145	559	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	176	190	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	197	215	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	219	240	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	223	231	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	3.9E-9	302	311	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.7E-73	312	334	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	385	404	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	419	435	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	436	447	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.7E-73	454	477	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	3.9E-9	457	467	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.7E-73	491	513	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	3.9E-9	542	556	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	3.9E-9	557	571	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0009570	Cellular Component	chloroplast stroma
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MQRLQASEDE EEEMGVKEEE EGDDYSDDEH AGRYLASPGA MLPVVSGGGV RRSRAREEKE 60 RTKLRERQRR AITARILAGL RRHGNYNLRA RADINEVIAA LAREAGWVVL PDGTTFPSSS 120 QSQVADVVPR PPERDFAGTA YVPVYVMLPL GVVNGNGEVV DADGLVGQLR VLKAAGVDGV 180 MVDCWWGNVE AHRPQEYNWT GYKRLFRMIR ELKLKLQVVM SFHECGGNVG DDVSIPLPHW 240 VTETGRSNPD IYFTDKAGRR NMECLSWGID KERVLQGRTA VEVYFDYMRN FRVEFDEYFE 300 DGIISEIEIG LGACGELRYP SYPAKHGWKY PGIGEFQCYD RYFQKSLRKA AEARGHTIWA 360 RAPDNAGHYN SEPNLTGFFC DGGDYDSYYG RFFLNWYSQI LVDHADRVLM LARLAFEGSN 420 IAVKVSGVHW WYKSASHAAE LTAGFYNPCN RDGYAPIAAV LKKHGAALNF TCAELRTMDQ 480 HEVFPEAFAD PEGLVLNAAW DAGIPVASEN ALPCYDRDGF NKILENAKPL NDPDGRHLLG 540 FTYLRLSKVL FERPNFLEFE RFVKRMHGEA VLDLQRWCIL TKEADCMELE KLLKIVEDWM 600 KSFCTSK*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MQRLQASEDE EEEMGVKEEE EGDDYSDDEH AGRYLASPGA MLPVVSGGGV RRSRAREEKE  60
RTKLRERQRR AITARILAGL RRHGNYNLRA RADINEVIAA LAREAGWVVL PDGTTFPSSS  120
QSQVADVVPR PPERDFAGTA YVPVYVMLPL GVVNGNGEVV DADGLVGQLR VLKAAGVDGV  180
MVDCWWGNVE AHRPQEYNWT GYKRLFRMIR ELKLKLQVVM SFHECGGNVG DDVSIPLPHW  240
VTETGRSNPD IYFTDKAGRR NMECLSWGID KERVLQGRTA VEVYFDYMRN FRVEFDEYFE  300
DGIISEIEIG LGACGELRYP SYPAKHGWKY PGIGEFQCYD RYFQKSLRKA AEARGHTIWA  360
RAPDNAGHYN SEPNLTGFFC DGGDYDSYYG RFFLNWYSQI LVDHADRVLM LARLAFEGSN  420
IAVKVSGVHW WYKSASHAAE LTAGFYNPCN RDGYAPIAAV LKKHGAALNF TCAELRTMDQ  480
HEVFPEAFAD PEGLVLNAAW DAGIPVASEN ALPCYDRDGF NKILENAKPL NDPDGRHLLG  540
FTYLRLSKVL FERPNFLEFE RFVKRMHGEA VLDLQRWCIL TKEADCMELE KLLKIVEDWM  600
KSFCTSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-156	141	569	11	444	BETA-AMYLASE
1bya_A	1e-156	141	569	11	444	BETA-AMYLASE
1byb_A	1e-156	141	569	11	444	BETA-AMYLASE
1byc_A	1e-156	141	569	11	444	BETA-AMYLASE
1byd_A	1e-156	141	569	11	444	BETA-AMYLASE
1q6c_A	1e-156	141	569	11	444	beta-amylase
1wdp_A	1e-156	141	569	11	444	Beta-amylase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269\|PubMed:18390594, ECO:0000269\|PubMed:19664588}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001239G0650

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly by cold stress. {ECO:0000269\|PubMed:16297066}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070300	0.0	AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696458.1	0.0	PREDICTED: LOW QUALITY PROTEIN: beta-amylase 2, chloroplastic-like
Swissprot	O65258	0.0	BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBL	A0A0E0QVA7	0.0	A0A0E0QVA7_ORYRU; Beta-amylase
STRING	ORUFI09G21750.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Smith AM,Zeeman SC,Smith SM Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] Lundmark M,Cavaco AM,Trevanion S,Hurry V Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] Li J, et al. Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] Monroe JD, et al. Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]