PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001229G0260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 36046.1 Da PI: 8.5502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++v ++G+g +W + +++ g++R++k+c++rw++yl PH01001229G0260 14 KGPWSPEEDRKLKEYVDKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.1 | 3.5e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ PH01001229G0260 69 GDFSDDEDRIICNLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.755 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.97E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.67E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.166 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.77E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDRKLKEYVD KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDDEDRIIC NLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL 120 PPTQRSKPVN HHKQQQLFFT AAAATAPILG DASTTTGAAA AAAHDHPFSL QHLAAPHQYS 180 SSSSSYSSSH CSSLQTASGG LMFGGDQQQM ITSSSCSDNG SLYFELCSGN SAGASASVGL 240 ESIFGGFDSM QNNLFPAHNT SGANLLDHQM YISRSSSDNN NAAPSWYEHE MKPFWVVPSG 300 STGLGLAAGG ATSSLFYGEA GAATSGAAAG ASQGRFLY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001229G0260 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956269.1 | 8e-91 | myb-related protein Hv1 | ||||
TrEMBL | A0A2S3GXU5 | 1e-92 | A0A2S3GXU5_9POAL; Uncharacterized protein | ||||
STRING | Si030544m | 3e-90 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-76 | myb domain protein 36 |