PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001229G0220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 29770.7 Da PI: 7.9447 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 102 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g GVr+++ +g+++AeIrd + k +r++lg+f+t+e Aa a+++a+ + +g PH01001229G0220 102 GLIGVRRRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAAMAYDQAAFSVRG 152 567******.**********32..2.24**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.997 | 102 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 102 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.4E-8 | 103 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-13 | 104 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.81E-18 | 105 | 162 | No hit | No description |
SMART | SM00380 | 8.2E-31 | 105 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-28 | 105 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-8 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MEQACYSSSS SSLLTTQQHH SYTTSTAMNL LLIPSVPPGA CHLDTTASSS LPLDTNEDDM 60 HILNTLLLEM DMEASSSSSS SSSTSSSPDQ PPKRRDHQPI KGLIGVRRRP WGKFAAEIRD 120 STRKGARVWL GTFDTPEAAA MAYDQAAFSV RGAAAVLNFP VDRVQESLRT LALAAAGGSP 180 VLALKRRHSI RKRSPSKKKT ISHKQQQLAA IKEPVPKPCP WPGVVELEDL GADYLEELLR 240 VSESEPVVVH GSSPPACNQL HRGGDLPSLL GCWLAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-25 | 105 | 160 | 17 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001229G0220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034174 | 4e-73 | BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds. | |||
GenBank | JX469950 | 4e-73 | JX469950.1 Zea mays subsp. mays clone UT3211 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198425.1 | 2e-61 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A287MW70 | 2e-63 | A0A287MW70_HORVV; Uncharacterized protein | ||||
STRING | BRADI4G38930.1 | 5e-62 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-47 | ethylene response factor 1 |