PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001221G0230

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 338aa MW: 36496.2 Da PI: 9.5278

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001221G0230	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3.1e-32	151	204	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PH01001221G0230 151 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 204 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.33E-15	148	205	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	149	204	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	151	205	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	152	203	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDHFRHLGFW RATDSGAAAK DTPSATLATS GHHLLSLATA AASNPTASTS GSAATATASN 60 SIPYNTAAGY RQQQQQVNSH GYYNNYNRYH LMNALLKPIR GVPIYHHHPF QLQQQQQHMV 120 MASQSGSGRG GGGFFSSRSR FPPGRRSVRA PRMRWTTTLH ARFVHAVELL GGHERATPKS 180 VLELMDVKDL TLAHVKSHLQ MYRTIKNTDK PAVSSGQNDG FENGSAGEIS DDSLPETGST 240 RRTDQSLAQN INGTTANSHN SNHNHSACGL WSNSSSRAGC PDFGSPNESI TETGRQYLKE 300 APPKSLEMSE MNVSCISETS SPPAGQPNLE FTLGRPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-16	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-16	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-16	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-16	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001221G0230

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233652.1	1e-113	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	2e-50	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0A8Z9Z7	1e-122	A0A0A8Z9Z7_ARUDO; Uncharacterized protein
STRING	BRADI3G00550.1	1e-111	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-49	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]