PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001215G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 565aa    MW: 62005.7 Da    PI: 10.1413
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001215G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.62.9e-171701783
         trihelix 17 meerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
                     m+ ++r+++lk+plWeevs+       +e g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f+
  PH01001215G0530  1 MDAAFREAALKGPLWEEVSRSGaarrlAEMGYRRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFS 70
                     6889***************98888888*******************************97..5555688886 PP
2trihelix103.41.6e-32290375187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+e+e+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr  e s+tcpy+ qlea
  PH01001215G0530 290 RWPKAEVHALIQLRTELETRYQEAGPKGPLWEDISAGMRRLGYSRSAKRCKEKWENINKYFKKVKESNKKR-LEGSKTCPYYYQLEA 375
                      8*********************************************************************9.56778*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.05E-15154No hitNo description
PfamPF138374.7E-11471No hitNo description
PROSITE profilePS500903.951547IPR017877Myb-like domain
PROSITE profilePS500907.131283347IPR017877Myb-like domain
SMARTSM007170.0047287349IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-4288346IPR009057Homeodomain-like
PfamPF138371.6E-22289376No hitNo description
CDDcd122034.03E-28290354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MDAAFREAAL KGPLWEEVSR SGAARRLAEM GYRRSAKKCR EKFENVDKYY KRTKDGRAGR  60
GDGKAYRFFS RPRRRSLSRR RPFSLGSEGS DGEDTEETAG GGKRKRRSWG RKRRSGVGGG  120
EAMRFFEGLM RQVMELQEAM QQRLLEAIER RDQDRMIREE AWRRQEVARL AREQDAIARE  180
RAMAASRDAA VISFIQRITG QTIPLPSMAA PAAITSLIPP PLKATPVASA APAPPPPQHQ  240
QAPPVQPQQP HTMPMTPQPQ PMNAQSKEVV RAPEPQNTAG SGGGGASSSR WPKAEVHALI  300
QLRTELETRY QEAGPKGPLW EDISAGMRRL GYSRSAKRCK EKWENINKYF KKVKESNKKR  360
LEGSKTCPYY YQLEALYRSK ALASSGAGAG GVNLSPRPEV AVTVLAAVPL SQTAPVHDEH  420
GGKNCGNGNG NGCASRDNGD SSGGMQMKAS NGSVVARFSI EGGAGGGNSV ATNKLGLKQE  480
GVVKETTTEK RQQPVAMNNN YSNDRMDDMD SDSDSMDEED DDDVGGGMMQ VQAKSQKFAE  540
INFPGSNSFS SFFFCETWYM PILV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001215G0530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104461e-122AC210446.1 Oryza glaberrima clone OG_BBa0010J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.11e-160trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2T7CIN41e-164A0A2T7CIN4_9POAL; Uncharacterized protein
STRINGPavir.Ia04768.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-45Trihelix family protein