PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001215G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family FAR1
Protein Properties Length: 906aa    MW: 101105 Da    PI: 7.8551
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001215G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.17.2e-19765855189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      +fY++YA  +GFsvr+ + ++   ng   +r+++C + g + e+ k+    ++k+  +++ +r+gC+ ++ +k+++d+k+++++++  HnH +
  PH01001215G0380 765 EFYKAYALVAGFSVRIGQRTTM--NGVLQWRQYYCARRGWKGERGKDkldvKVKRTYESKLSRCGCEVMFGIKRTEDNKFRLETFVDVHNHGF 855
                      6****************97666..*******************9999998878888899********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.203.3E-10152No hitNo description
SMARTSM002205.2E-191272IPR000719Protein kinase domain
PROSITE profilePS5001124.9511272IPR000719Protein kinase domain
SuperFamilySSF561121.61E-401137IPR011009Protein kinase-like domain
PfamPF000691.0E-293272IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.3E-2153127No hitNo description
PROSITE patternPS0010806476IPR008271Serine/threonine-protein kinase, active site
PfamPF077951.6E-13135192IPR012862Protein of unknown function DUF1635
Gene3DG3DSA:1.10.510.107.5E-9181273No hitNo description
SuperFamilySSF561121.61E-40231314IPR011009Protein kinase-like domain
PfamPF031015.6E-16765855IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MSLIDHPNVI RAYCSFVVDH NLWVVMPYMT EGSCLHLMKV AYPDGFEEPV IGSILKETLK  60
ALEYLHRDVK AGNILIDSPG VVKLGDFGVS ACMFDRGDRQ RSRNTFVGTP CWMAPEVLQP  120
GAGYNFKMMC SRKRAEALKQ SLLATTLELE AAKEELKKKE QSIAKLVNLV RQVAKEHDDA  180
HDQMQHLLSA SKSATEYPRR QRLDLGRRQE STQGIGSRGE VLLMTLQNAP PGLDYDRDRR  240
FSKSFKEMVA MCLVKDQTKR PTAEKLLKHS FFKNAKAPEL TVKSILTDLP PLWDRVKALQ  300
LKDEAQLALK KMPSSEQEAL SMSEYQRGVS AWNFDIEDLK VQASLIHDDN PPEIKEDDDS  360
AKITEVDKGL KLPFIEFEDE RTCATAVNPG GNGPETSEAL VSDLGNADNK RKVDGCRNQG  420
SENDSLPSTL KHDSEGKNYK SEVRQKQRTY SGPILHSGVH NSSVTERGRI IDRDAGGQLV  480
SDKQKNDMRR TNNLSGPLSL PTRASANSLS APIRSSGGYV GSLGDKPKRN AVEIKGRFSV  540
TSENVDLAKV QEIPKGSVSR KLQEGSALRK SASVGDWSVN AKRMDLITNL LSNLQQNEKV  600
DVLVAMLHCL EMNKEAVSGG TPSTSVIQIA SDPAKHELTK HTGVDAHPSH SLIVSSRPST  660
SRYFISVMVL NKIFKYSYIQ SAKYTHDNRM DEMEDVSSSV RPLALPSPEP LEMADAHYLI  720
AISDCKTPLK AASILFCGSS FTPVVTESLT HVKGMIFEDE DATLEFYKAY ALVAGFSVRI  780
GQRTTMNGVL QWRQYYCARR GWKGERGKDK LDVKVKRTYE SKLSRCGCEV MFGIKRTEDN  840
KFRLETFVDV HNHGFISPKT PEEFESQWTA IISEFGLEDN EWLAGWYRIQ ASWVSAYFMD  900
VSLPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vwi_A1e-32112767207SERINE/THREONINE-PROTEIN KINASE OSR1
2vwi_B1e-32112767207SERINE/THREONINE-PROTEIN KINASE OSR1
2vwi_C1e-32112767207SERINE/THREONINE-PROTEIN KINASE OSR1
2vwi_D1e-32112767207SERINE/THREONINE-PROTEIN KINASE OSR1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001215G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219701e-170AK121970.1 Oryza sativa Japonica Group cDNA clone:J033108H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631563.10.0serine/threonine-protein kinase fray1 isoform X1
TrEMBLA0A3L6TRM70.0A0A3L6TRM7_PANMI; Uncharacterized protein
STRINGOMERI03G00980.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.12e-10WRKY family protein