PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001206G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 420aa    MW: 45228.3 Da    PI: 8.5839
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001206G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-1275131155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  PH01001206G0160  75 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 131
                      78*******************77776664346655.77******************98 PP
2AP252.89.6e-17174225155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  PH01001206G0160 174 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 225
                      57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1475140IPR016177DNA-binding domain
PfamPF008476.3E-1075131IPR001471AP2/ERF domain
CDDcd000181.67E-1775139No hitNo description
Gene3DG3DSA:3.30.730.107.5E-1376140IPR001471AP2/ERF domain
PROSITE profilePS5103217.35976139IPR001471AP2/ERF domain
SMARTSM003808.3E-2376145IPR001471AP2/ERF domain
PRINTSPR003671.8E-67788IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-18174234IPR016177DNA-binding domain
CDDcd000183.31E-24174235No hitNo description
PfamPF008475.0E-12174225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18175233IPR001471AP2/ERF domain
SMARTSM003801.5E-33175239IPR001471AP2/ERF domain
PROSITE profilePS5103218.927175233IPR001471AP2/ERF domain
PRINTSPR003671.8E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPSHSAGHLH PLTLSMSSGS QSSCVTMQSA AAHAGSGSEY VAMDGICKKR GTDRGGQSKQ  60
PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR  120
AYDLAALKYW GPSTHINFPL EDYQEELEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT  180
RHHQHGRWQA RIGRVSGNKD LYLGTFGTQE EAAEAYDVAA IKFRGLNAVT NFDITRYDVD  240
KIMASNTLLP GELVRRKKDN DAAAEITEST AVANAAAALV QAGSATDWKV ATALPSARTA  300
TPCSDEHSHH HDLLSSEAFS VLHDIVSVDA VTAGADADSA QGNASAHMSN TSSLATSLSN  360
SLEQSPDRGG GLAMLFAKPA ASKLASSLPL GSWVSPSPVP TRPGVSIAHM PLFAAWTDL*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001206G0160
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-171AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981612.10.0AP2-like ethylene-responsive transcription factor ANT isoform X4
SwissprotQ84Z021e-180CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGOPUNC03G32650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]