PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001205G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 184aa    MW: 19748.3 Da    PI: 4.5986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001205G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-182069255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e Aa a++ a+++l+g
  PH01001205G0030 20 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPELAAVAHDVAALRLRG 69
                     69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.68E-292079No hitNo description
SMARTSM003808.2E-362083IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-212078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-312078IPR001471AP2/ERF domain
PROSITE profilePS5103223.3542077IPR001471AP2/ERF domain
PRINTSPR003678.5E-132132IPR001471AP2/ERF domain
PfamPF008472.5E-112169IPR001471AP2/ERF domain
PRINTSPR003678.5E-135979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEVVLDNAGG AAAAGEVAGQ YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ESPELAAVAH  60
DVAALRLRGR EARLNFPDLV HHFRRPATAE PDDVRGAALE AAAQVRFRPD LVMQPDGCGG  120
VAGADRLGDA AWDVLLGADE LAAESPIMWA ELAEAMLMAP PVWEGCAADN DEWAQGLLWD  180
PSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162081567ATERF1
3gcc_A1e-162081567ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001205G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275117e-89KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828349.12e-87ethylene-responsive transcription factor ERF022
TrEMBLA0A1E5VJX24e-94A0A1E5VJX2_9POAL; Uncharacterized protein
STRINGPavir.J22217.1.p2e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.15e-29ERF family protein