PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001201G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 344aa    MW: 35405.8 Da    PI: 6.7877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001201G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20145194255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  PH01001201G0350 145 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 194
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-33145203IPR001471AP2/ERF domain
PROSITE profilePS5103225.686145202IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22145203IPR016177DNA-binding domain
PfamPF008471.1E-13145194IPR001471AP2/ERF domain
SMARTSM003801.7E-36145208IPR001471AP2/ERF domain
CDDcd000181.15E-19146204No hitNo description
PRINTSPR003671.1E-11146157IPR001471AP2/ERF domain
PRINTSPR003671.1E-11168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADPCGLRCG GGGEGRPARD EDDDEVEAVA ASTAGSSVLS GEYQAQEMST MVSALTRVVA  60
GDDRPWARRL AAAAGSGPAG RIWQWEATCM RTGATLLRRH RSSQQVTGEG QSSDAQGAAM  120
DEHSPTYTAE APAEQGGGGA PAGRRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFETAEA  180
AARAYDEAAL RFRGSRAKLN FPEDARLTSP TPAAAASSTP VASPTMASAA YPSSAVSDYL  240
RYQMLLHGGG GGGSHGGFPL YYGGGGGAGA MSSSLGSYSF PASSVTVASV PSSASSVPSY  300
SAAAEHGEAA QWTWPAEGAW TCPATTGSWS GSSQYPPPPR RPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24143202363ATERF1
3gcc_A6e-24143202363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001201G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.26e-61ethylene-responsive transcription factor ABR1
TrEMBLA0A287G9J72e-65A0A287G9J7_HORVV; Uncharacterized protein
STRINGORUFI05G19030.13e-60(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-26ethylene response factor 110