PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001184G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 256aa    MW: 27530.9 Da    PI: 9.9751
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001184G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.71.2e-18186239559
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                      +r++r++kNRe+A rsR+RK+a++ eLe+k+  Le+eNk+L+ el++l+ +v+++
  PH01001184G0380 186 RRQKRMIKNRESAARSRARKQAYTNELENKISRLEEENKRLR-ELKMLEPMVQYV 239
                      79****************************************.*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-15179233No hitNo description
SMARTSM003384.7E-12182250IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.289184228IPR004827Basic-leucine zipper domain
PfamPF001701.5E-14186237IPR004827Basic-leucine zipper domain
CDDcd147071.01E-21186237No hitNo description
SuperFamilySSF579592.5E-11186228No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGAQTMSSHG DGGALSRQGS VYNLTLNEVE SHLGEPLRSM NLDDLLRTVL PAADPHAAGA  60
TAGKKTVDEV WRDIQSASRD RQPTMGEMTL EDFLSRAGVA VAGGPCAGGA HWLQQYPQPQ  120
QYVGRPVPRP LEVGAGPVLD AVYRDGHGGG GGGGVGGFLS QVGGRKRGAA AGAAGGDGVV  180
EKTVERRQKR MIKNRESAAR SRARKQAYTN ELENKISRLE EENKRLRELK MLEPMVQYVP  240
QPEPKHQLRR TNSASF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164188RKRGAAAGAAGGDGVVEKTVERRQK
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001184G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951240.0FP095124.1 Phyllostachys edulis cDNA clone: bphylf025g11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183813.11e-120ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9C5Q25e-61AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A3B6ARJ71e-120A0A3B6ARJ7_WHEAT; Uncharacterized protein
TrEMBLA0A446KLL71e-120A0A446KLL7_TRITD; Uncharacterized protein
STRINGOPUNC07G25180.11e-101(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.32e-40bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]