PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001184G0160

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 444aa MW: 47232.8 Da PI: 7.6912

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001184G0160	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrk+k+ss PH01001184G0160 66 PDKILACPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGIMRNVPVGAGRRKSKSSS 126 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	63	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-32	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.351	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MRITEEQPCT DQELDLGQTN SSSLNSSSEC ENQTSNNHEM TGSESKLEAA KTEGEGSSRE 60 KVLKKPDKIL ACPRCNSMDT KFCYYNNYNI NQPRHFCKSC QRYWTAGGIM RNVPVGAGRR 120 KSKSSSANCR SILIPGSSLA TPGGDSSLFP LSRKGNQAAV KFGPDSPLCN SMSSVLKIVE 180 QSKNANPAST AQPRNGENQT CPPSATASDS LRKDSVKGTI GGHQNGITGH CNGVTPMHPI 240 PCFPGPPFVY PWSPAWNGIP AMAAPVCPAP AEAANASENG NAGHVQWNEP AMVLVPGFCG 300 PPIPFPVMPP PVWPFISPWP NGAWSAPWLG PSCSVSASSP TSSSTCSDSG SPVLGKHSRD 360 SNPQGDENAE KCLWIPKTLR IDDPDEAAKS SIWTTLGIEP GERGMFRPFQ SKSDGREQIS 420 GAARVLQANP VALSRSQSFQ ETT*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MRITEEQPCT DQELDLGQTN SSSLNSSSEC ENQTSNNHEM TGSESKLEAA KTEGEGSSRE  60
KVLKKPDKIL ACPRCNSMDT KFCYYNNYNI NQPRHFCKSC QRYWTAGGIM RNVPVGAGRR  120
KSKSSSANCR SILIPGSSLA TPGGDSSLFP LSRKGNQAAV KFGPDSPLCN SMSSVLKIVE  180
QSKNANPAST AQPRNGENQT CPPSATASDS LRKDSVKGTI GGHQNGITGH CNGVTPMHPI  240
PCFPGPPFVY PWSPAWNGIP AMAAPVCPAP AEAANASENG NAGHVQWNEP AMVLVPGFCG  300
PPIPFPVMPP PVWPFISPWP NGAWSAPWLG PSCSVSASSP TSSSTCSDSG SPVLGKHSRD  360
SNPQGDENAE KCLWIPKTLR IDDPDEAAKS SIWTTLGIEP GERGMFRPFQ SKSDGREQIS  420
GAARVLQANP VALSRSQSFQ ETT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001184G0160

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658977.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X1
Refseq	XP_015695353.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X2
TrEMBL	A0A0E0LPX4	0.0	A0A0E0LPX4_ORYPU; Uncharacterized protein
STRING	OPUNC07G25110.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-50	cycling DOF factor 2