PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001184G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 333aa MW: 36646.8 Da PI: 6.3133 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.7 | 3.1e-55 | 18 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee+v++yL++kv + +++ vi++vd++k+ePw+Lp+k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ PH01001184G0040 18 LPPGFRFHPTDEEVVSHYLTPKVLDCLFSC-VVIADVDLNKCEPWHLPSKAKMGEKEWYFFCHKDRKYPTGMRTNRATESGYWKATGKDKEIFR 110 79*************************999.78***************99999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfy grap+gekt Wvmheyrle PH01001184G0040 111 GRGVLVGMKKTLVFYLGRAPRGEKTPWVMHEYRLE 145 *********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-63 | 14 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.478 | 18 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-29 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MSEVSVINQG EEEPQLELPP GFRFHPTDEE VVSHYLTPKV LDCLFSCVVI ADVDLNKCEP 60 WHLPSKAKMG EKEWYFFCHK DRKYPTGMRT NRATESGYWK ATGKDKEIFR GRGVLVGMKK 120 TLVFYLGRAP RGEKTPWVMH EYRLEGKLPP HLPRSAKDEW AVCRVINKDL AAKSAQMAPG 180 GGAAAGGMVR SDSLAFLEDF LDTAELPPLM DPPLANVDFK GASTSGAAAT TPPDMGYQAV 240 KTEQPVPPQQ SPYYLPLPAA NNNSGAGYLH PAMGDQAAIR RYCKAGASAL LSPSRGGEMG 300 HAAADMSSSK QYLELDDLCP DYPLLDYSNM WML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 7 | 173 | 9 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001184G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096183 | 0.0 | FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461233.1 | 1e-137 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 5e-92 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0A9IAM4 | 1e-161 | A0A0A9IAM4_ARUDO; Uncharacterized protein | ||||
STRING | Sb02g043270.1 | 1e-136 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-87 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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