PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001184G0040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 333aa    MW: 36646.8 Da    PI: 6.3133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001184G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.1e-55181451129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee+v++yL++kv +  +++  vi++vd++k+ePw+Lp+k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++
  PH01001184G0040  18 LPPGFRFHPTDEEVVSHYLTPKVLDCLFSC-VVIADVDLNKCEPWHLPSKAKMGEKEWYFFCHKDRKYPTGMRTNRATESGYWKATGKDKEIFR 110
                      79*************************999.78***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfy grap+gekt Wvmheyrle
  PH01001184G0040 111 GRGVLVGMKKTLVFYLGRAPRGEKTPWVMHEYRLE 145
                      *********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-6314168IPR003441NAC domain
PROSITE profilePS5100557.47818168IPR003441NAC domain
PfamPF023654.5E-2919144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSEVSVINQG EEEPQLELPP GFRFHPTDEE VVSHYLTPKV LDCLFSCVVI ADVDLNKCEP  60
WHLPSKAKMG EKEWYFFCHK DRKYPTGMRT NRATESGYWK ATGKDKEIFR GRGVLVGMKK  120
TLVFYLGRAP RGEKTPWVMH EYRLEGKLPP HLPRSAKDEW AVCRVINKDL AAKSAQMAPG  180
GGAAAGGMVR SDSLAFLEDF LDTAELPPLM DPPLANVDFK GASTSGAAAT TPPDMGYQAV  240
KTEQPVPPQQ SPYYLPLPAA NNNSGAGYLH PAMGDQAAIR RYCKAGASAL LSPSRGGEMG  300
HAAADMSSSK QYLELDDLCP DYPLLDYSNM WML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-5371739173NAC domain-containing protein 19
3swm_B1e-5371739173NAC domain-containing protein 19
3swm_C1e-5371739173NAC domain-containing protein 19
3swm_D1e-5371739173NAC domain-containing protein 19
3swp_A1e-5371739173NAC domain-containing protein 19
3swp_B1e-5371739173NAC domain-containing protein 19
3swp_C1e-5371739173NAC domain-containing protein 19
3swp_D1e-5371739173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001184G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961830.0FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461233.11e-137NAC domain-containing protein 79
SwissprotQ9FK445e-92NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0A9IAM41e-161A0A0A9IAM4_ARUDO; Uncharacterized protein
STRINGSb02g043270.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-87Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]