PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001174G0490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 442aa    MW: 49727 Da    PI: 6.5086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001174G0490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-18141187148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  PH01001174G0490 141 KGQWTLEEDRKLVKLVEQFGLRKWSHIAQMLP-GRVGKQCRERWHNHL 187
                      799*****************************.*************97 PP
2Myb_DNA-binding49.87.8e-16193235145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
  PH01001174G0490 193 KDTWSEEEDMVLIQTHKEVGNK-WAEIAKRIP-GRTENSIKNHWN 235
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.481136191IPR017930Myb domain
SuperFamilySSF466892.14E-31138234IPR009057Homeodomain-like
SMARTSM007173.1E-16140189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-29142194IPR009057Homeodomain-like
CDDcd001676.71E-16144187No hitNo description
PfamPF139211.4E-19144202No hitNo description
PROSITE profilePS5129419.833192242IPR017930Myb domain
SMARTSM007174.7E-15192240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-21195240IPR009057Homeodomain-like
CDDcd001673.74E-12195238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDFSCFQPHA GGISCDDMPF DSYVQQNSHH ELLPVDHPFE GISHECTPAR GSIVPFAAFY  60
DLGDHEYYYP QGGSKKAVVD NASPIVQNAG SDHLPLLTPK TEVSHLIGGG VRSYKAYQMN  120
GRFIPRKKAS SKTLKKANVV KGQWTLEEDR KLVKLVEQFG LRKWSHIAQM LPGRVGKQCR  180
ERWHNHLRPN IKKDTWSEEE DMVLIQTHKE VGNKWAEIAK RIPGRTENSI KNHWNATKRR  240
QFARRRSRTS SKTPKSGTIL QNYIKSLGIG PSKAIAPLAP QEPTLSPSSP ASSSTPKSEQ  300
MNDKRPESNP SNMTLTQGML SVHEDSYSQI HSCEELVVPT CDEFSIDMCD GLFDTKEEAQ  360
FQVYNIDDDV DMNYIFNHID YAIKIDHEID MEMTWDDDAL ENIEPGSAPL VTPAGPAQIK  420
TVHVKEEMDL VEMVTHTHTC S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-431392422105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-431392422105C-Myb DNA-Binding Domain
1msf_C3e-431392422105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001174G0490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641269.10.0transcription factor MYB119 isoform X1
TrEMBLA2Y9N90.0A2Y9N9_ORYSI; Uncharacterized protein
STRINGLPERR06G03780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-62myb domain protein 98