PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001168G0540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 365aa    MW: 40366.6 Da    PI: 9.7078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001168G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.5e-49231482128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kveg+++++ e i+ vd+y+++PwdLp+++  ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v ++
  PH01001168G0540  23 MPGFRFHPTEEELIEFYLRRKVEGRRFNI-ELIALVDLYRFDPWDLPAQAPIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVE 115
                      79***************************.89***************98899****************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy g+apkg +++W+m+eyrl
  PH01001168G0540 116 GHRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 148
                      *******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5622168IPR003441NAC domain
PROSITE profilePS5100555.06622168IPR003441NAC domain
PfamPF023651.5E-2424148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRGADHHDTA RGGDDGQAHD MVMPGFRFHP TEEELIEFYL RRKVEGRRFN IELIALVDLY  60
RFDPWDLPAQ APIGDKEWFF YVPRDRKYRN GDRPNRVTPS GYWKATGADR MVRVEGHRSI  120
GLKKTLVFYV GKAPKGLRSS WIMNEYRLPH GEADRYQKEI SLCRVYKRPG IVDNFHLTGT  180
TTKSSGSKAA AATDKKHSTA NRTSAAPRLA PMFVDDGHSS ALMDQKAYIG HATEGTNTTM  240
SLSAAGGGAT LQPTSMFRST ASVASPRSTT STEEDGTSLY HLKGANPMQL PSSMHALLNA  300
NSSTMATIPI DGPSRAIAIG SYNQANPNQP MPPSQGPFLP FPSMEKIWDW NLLLESPKFL  360
GYMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-552416819165NO APICAL MERISTEM PROTEIN
1ut4_B2e-552416819165NO APICAL MERISTEM PROTEIN
1ut7_A2e-552416819165NO APICAL MERISTEM PROTEIN
1ut7_B2e-552416819165NO APICAL MERISTEM PROTEIN
4dul_A2e-552416819165NAC domain-containing protein 19
4dul_B2e-552416819165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001168G0540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683931e-172AK068393.1 Oryza sativa Japonica Group cDNA clone:J013151L09, full insert sequence.
GenBankAK0710521e-172AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBankAK0722751e-172AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
GenBankKP0331891e-172KP033189.1 Oryza sativa cultivar Dong Jin NAC-related protein 49 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973013.11e-176NAC domain-containing protein 35
TrEMBLA0A0D9X3S90.0A0A0D9X3S9_9ORYZ; Uncharacterized protein
STRINGLPERR08G01330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-94NAC domain containing protein 35