PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001168G0540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 40366.6 Da PI: 9.7078 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.5e-49 | 23 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ vd+y+++PwdLp+++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v ++ PH01001168G0540 23 MPGFRFHPTEEELIEFYLRRKVEGRRFNI-ELIALVDLYRFDPWDLPAQAPIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVE 115 79***************************.89***************98899****************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy g+apkg +++W+m+eyrl PH01001168G0540 116 GHRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 148 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-56 | 22 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.066 | 22 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MRGADHHDTA RGGDDGQAHD MVMPGFRFHP TEEELIEFYL RRKVEGRRFN IELIALVDLY 60 RFDPWDLPAQ APIGDKEWFF YVPRDRKYRN GDRPNRVTPS GYWKATGADR MVRVEGHRSI 120 GLKKTLVFYV GKAPKGLRSS WIMNEYRLPH GEADRYQKEI SLCRVYKRPG IVDNFHLTGT 180 TTKSSGSKAA AATDKKHSTA NRTSAAPRLA PMFVDDGHSS ALMDQKAYIG HATEGTNTTM 240 SLSAAGGGAT LQPTSMFRST ASVASPRSTT STEEDGTSLY HLKGANPMQL PSSMHALLNA 300 NSSTMATIPI DGPSRAIAIG SYNQANPNQP MPPSQGPFLP FPSMEKIWDW NLLLESPKFL 360 GYMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 24 | 168 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 24 | 168 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 24 | 168 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 24 | 168 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-55 | 24 | 168 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 24 | 168 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001168G0540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068393 | 1e-172 | AK068393.1 Oryza sativa Japonica Group cDNA clone:J013151L09, full insert sequence. | |||
GenBank | AK071052 | 1e-172 | AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence. | |||
GenBank | AK072275 | 1e-172 | AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence. | |||
GenBank | KP033189 | 1e-172 | KP033189.1 Oryza sativa cultivar Dong Jin NAC-related protein 49 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973013.1 | 1e-176 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A0D9X3S9 | 0.0 | A0A0D9X3S9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G01330.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 4e-94 | NAC domain containing protein 35 |