PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001163G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 312aa    MW: 33229.5 Da    PI: 8.8145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001163G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19146195255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  r++lg+f+tae Aa+a++ a+++++g
  PH01001163G0450 146 HYRGVRRRP-WGKWAAEIRDPQ----KaVRVWLGTFDTAEAAAAAYDVAALRFKG 195
                      69*******.**********93....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-19145204No hitNo description
PROSITE profilePS5103225.528146203IPR001471AP2/ERF domain
SMARTSM003803.4E-35146209IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22146204IPR016177DNA-binding domain
PfamPF008471.0E-12146195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-32146204IPR001471AP2/ERF domain
PRINTSPR003673.3E-11147158IPR001471AP2/ERF domain
PRINTSPR003673.3E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKVEHRRRHG KRPLPDDHQE EQRPRLEEDQ SPAAAKAIAG SGSSAATGDV VEQQPLLGSG  60
GGGRAAVDHE HYWPAYYAQA EKQDTATKTY IMRSSSHHHP HLAAAGPTPS PSESDHRAAE  120
GEAGPAAAAA APAAETQGAS PTTRQHYRGV RRRPWGKWAA EIRDPQKAVR VWLGTFDTAE  180
AAAAAYDVAA LRFKGAKAKL NFPERVQGRT GQGFLVTPGV PHPQHGSAPT AVVPFPDLMQ  240
YAQPLQSVND EGVPPPPPSS SVQILDFSAQ QFVRASPTIT DTSSRPPSTS TSTTTSSSPS  300
TWPHGEHNSR GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23145207467ATERF1
3gcc_A4e-23145207467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001163G0450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935570.0FP093557.1 Phyllostachys edulis cDNA clone: bphylf026a15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647050.11e-49ethylene-responsive transcription factor ABI4 isoform X2
TrEMBLA0A0E0K0E83e-49A0A0E0K0E8_ORYPU; Uncharacterized protein
STRINGOPUNC02G16450.15e-50(Oryza punctata)
STRINGGRMZM2G016434_P014e-49(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-28related to AP2 6l