PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001160G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 526aa    MW: 55437.1 Da    PI: 4.7348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001160G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12332377555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L+el+P++      K +Ka++L + +eY+k Lq
  PH01001160G0380 332 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLHEIIEYVKFLQ 377
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17325388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-12325381No hitNo description
PROSITE profilePS5088817.072327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16329387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9332377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-13333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MGGFVDPFIP SPAWPQDIVF TGSSWTSSAS SLADSSAEDV EFHLRNGSSP TLMYGGSAKE  60
AVDGAVFLGK TMLSPVKLHE QLLQAELQQS DGLDFAMDGS AECALMDGTL GSILSTPCPM  120
SLTDSAPANC SSNESSGSEQ SGLPQFLMGD QQPVSASAEW PSAYANVSSM VGEETQQSFG  180
FGRIQNDDLL HEAACTPNGK KYQQLGTVPS LAQLQLHDDV EFRSGKLVSF APGQQVIPSI  240
DSLQINQEFS GLHHLNLSSL VSGPLASFNA TGAAHNPKQV SVFLFTEASG GKNGMIAPFV  300
NRSEVPNGNG SAGNGAPKPR VRARRGQATD PHSIAERLRR EKISDRMKNL QELVPNSNKT  360
DKASMLHEII EYVKFLQLQV KVLSMSRLGA TEAVVPLLTE SQTESSGLLL SPKSGERQAG  420
PAAEGGGLSQ SELQDSSAFE QEVVQLMENN MTTAMQYLQS KGLCLMPIAL ASAISSQKGT  480
SSAAIRQVSG GTDNGVGGGD TDDVKTVLEA LKPLLNSPKE MKSRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001160G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-58LJRHL1-like 3