PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001153G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 365aa    MW: 39396.4 Da    PI: 7.1588
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001153G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52241511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+k+  ++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++++
  PH01001153G0250  24 LPPGFRFHPTDEELILHYLRNRATSVQCPV-PIIADVDIYKFDPWDLPAKAVYGDGEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHD 116
                      79****************************.88***************77777899*************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl
  PH01001153G0250 117 SaTGESVGVKKALVFYRGRPPKGTKTSWIMHEYRL 151
                      988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6517186IPR003441NAC domain
PROSITE profilePS5100560.77324186IPR003441NAC domain
PfamPF023653.9E-2725151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTSSCTFLPA DRSIVSSAHP ATSLPPGFRF HPTDEELILH YLRNRATSVQ CPVPIIADVD  60
IYKFDPWDLP AKAVYGDGEW YFFSPRDRKY PNGIRPNRAA GSGYWKATGT DKPIHDSATG  120
ESVGVKKALV FYRGRPPKGT KTSWIMHEYR LAADPLAAAV NTYKPIKFRS VSMRLDDWVL  180
CRIYKKSGQA SPMVPPLADY DHLDHDETSG GFDDACFYAP PSSSSTSTCS AMITQQQAAP  240
GLPKISSISE LFDEYALAQI FDTAVPAETE HAPHLAVHPS LDQLLAVGDN VHAEYYYSSS  300
PAASGIAGKR KASPPGECAG AGIIAHPPAK RLNGSCFDAP QAVSGLQATS SVLGGLNHQI  360
LPRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-70161897171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001153G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989090.0FP098909.1 Phyllostachys edulis cDNA clone: bphyem117n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161118.11e-170protein ATAF2-like
TrEMBLA0A3B6C0271e-174A0A3B6C027_WHEAT; Uncharacterized protein
TrEMBLA0A446LWY61e-174A0A446LWY6_TRITD; Uncharacterized protein
STRINGTraes_2BS_C116E5668.11e-174(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-81NAC domain containing protein 47