PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001153G0050

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 537aa MW: 59811.2 Da PI: 9.6135

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001153G0050	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.8	4.9e-28	297	350	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl+Wt+e HerFveav+qLGG++kAtPkti++lm+++gLtl+++kSHLQ R PH01001153G0050 297 KPRLKWTNEQHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYQLKSHLQVQR 350 79*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.591	294	354	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-26	295	350	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-15	296	351	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-21	297	351	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	299	348	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-12	341	372	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MEHRRRQESF FPVAGHTTSL RAPVASLIAR ISSSSSSRPK LIRRPISFSD SDIAESSLDQ 60 SARVTQNFDE GPKSQDLLGL VPWTPRRSDW TSWKDCPRDP LDLLGGPGGL LGRTTVMLQR 120 WLQSSHGYSL LDYLTQPTFL WPGSSEQVAN LPKGIKENSM LIPFLGFVQS PEGIKELKNG 180 HLHFSSMQNF AQFFFWMPAV KRRKFSSSAL STDIPCPTHR REAQKCSGET GIGSQQLKDI 240 IQESNKRRGR QMYHQQQQQL QSHSQHLSSR SSLPPEKHFL LQGGGGDSGL ALSTDAKPRL 300 KWTNEQHERF VEAVNQLGGP DKATPKTIMR LMGIPGLTLY QLKSHLQVQR HLQLRIEAQG 360 KYLQSMLEKA QEALEKQNVA GTTVDLEAAK TQLSELVSKA SAKRLQNERS IIYQQRGDGS 420 IDCCLTSCEG SQRGDHGILS IGLSAANQSG TPFETARSGK DRGTISTSCE EYYLFPGKPS 480 RGASSDEHQE RREIRRDDGF SNMTLQTTAE LDLNINDGNC RPRNREKIDL NGSGRN*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MEHRRRQESF FPVAGHTTSL RAPVASLIAR ISSSSSSRPK LIRRPISFSD SDIAESSLDQ  60
SARVTQNFDE GPKSQDLLGL VPWTPRRSDW TSWKDCPRDP LDLLGGPGGL LGRTTVMLQR  120
WLQSSHGYSL LDYLTQPTFL WPGSSEQVAN LPKGIKENSM LIPFLGFVQS PEGIKELKNG  180
HLHFSSMQNF AQFFFWMPAV KRRKFSSSAL STDIPCPTHR REAQKCSGET GIGSQQLKDI  240
IQESNKRRGR QMYHQQQQQL QSHSQHLSSR SSLPPEKHFL LQGGGGDSGL ALSTDAKPRL  300
KWTNEQHERF VEAVNQLGGP DKATPKTIMR LMGIPGLTLY QLKSHLQVQR HLQLRIEAQG  360
KYLQSMLEKA QEALEKQNVA GTTVDLEAAK TQLSELVSKA SAKRLQNERS IIYQQRGDGS  420
IDCCLTSCEG SQRGDHGILS IGLSAANQSG TPFETARSGK DRGTISTSCE EYYLFPGKPS  480
RGASSDEHQE RREIRRDDGF SNMTLQTTAE LDLNINDGNC RPRNREKIDL NGSGRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-15	296	355	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001153G0050

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803980.1	2e-72	myb-related protein 1-like isoform X2
Swissprot	Q9FK47	5e-37	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1E5WGV3	1e-102	A0A1E5WGV3_9POAL; Myb family transcription factor APL
STRING	Pavir.Ba00251.1.p	2e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20987	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	1e-46	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]