PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001128G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 372aa    MW: 40301.1 Da    PI: 7.9331
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001128G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.67.5e-30223278156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+ eLH++Fv  +++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PH01001128G0130 223 KARRCWSAELHRQFVAMLQRLGGAQVATPKQIKELMKVDGLTNDEVKSHLQKYRLH 278
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.485220280IPR017930Myb domain
SuperFamilySSF466894.93E-16221281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26221281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24223278IPR006447Myb domain, plants
PfamPF002497.9E-6225276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGTSHSEAVP GLDLGLFAAK TVGNWLKEGV ASASSEQEEA ERFGECIRSL ETEKAKMEAF  60
RKELPMSVHL VGDFIGWLKD EADQRRIPTR ELFAPAPAKR KVEDKAGAVM KLEADANDKM  120
DWMSSAQLWS CGNHSDTTDT SKDGSKGRGV KKPSHKVPNA LNGLPTLATA SEKAGNATPP  180
VLAELSMSSP AIHGACPVSH NADANCSAID QARAQGQPAV QRKARRCWSA ELHRQFVAML  240
QRLGGAQVAT PKQIKELMKV DGLTNDEVKS HLQKYRLHAR RVSGPDQPMI GLWPKHEQRR  300
STSQDNTLHS SASPEVHLQT SGSSQSHPGS PEARLQLSES SRAVSVTAGD SYEEDRRSES  360
CSVETQHRTT S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001128G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.12e-95myb family transcription factor EFM-like
TrEMBLA0A3B6MLQ65e-94A0A3B6MLQ6_WHEAT; Uncharacterized protein
STRINGTraes_5BS_C9EA93E10.11e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-37G2-like family protein