PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001127G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 284aa    MW: 31715.7 Da    PI: 10.2888
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001127G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.91.9e-3034131297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++rlws  De+v+L+Gli ++ak+g+   ++ di +++  +++++s+kvs++ql++K+rrLK+K++   ++ak+g+++++ ++h+++i+el+k
  PH01001127G0440  34 RPSRLWSPGDELVILRGLIAYRAKRGAlpGSTLDIGKLHGHIRSQLSVKVSTTQLSDKVRRLKQKYQLLATRAKNGRDQDLPTSHEHSIYELAK 127
                      679************************655566************************************************************* PP

           DUF573  94 kiWg 97 
                      k+W+
  PH01001127G0440 128 KVWR 131
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-2636130IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPRRSAAF SEPRAKRPRS AAVGAASSAE QMKRPSRLWS PGDELVILRG LIAYRAKRGA  60
LPGSTLDIGK LHGHIRSQLS VKVSTTQLSD KVRRLKQKYQ LLATRAKNGR DQDLPTSHEH  120
SIYELAKKVW RTRTGGDDGG GGYENAGGGE SEEEQDSGDS DEDMESVRDD RDRKNRRLRP  180
VTMANGNGVA IGSANANGRG KSEFEKGKDA YPYLWETVEE LSREHPSGMA FKKAFEVFEG  240
SKARVMEEKL RKFRLTEIRQ QLRRMDLMKE TVKMVLDALE RAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001127G0440
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578208.11e-164STOREKEEPER protein
TrEMBLI1IQM51e-162I1IQM5_BRADI; Uncharacterized protein
STRINGBRADI4G31840.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-15DNA-binding storekeeper protein-related transcriptional regulator