PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001123G0500
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 778aa    MW: 85659.6 Da    PI: 8.193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001123G0500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20109158255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  PH01001123G0500 109 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 158
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-31108168No hitNo description
Gene3DG3DSA:3.30.730.105.9E-32109167IPR001471AP2/ERF domain
PROSITE profilePS5103223.354109166IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22109168IPR016177DNA-binding domain
SMARTSM003802.1E-36109172IPR001471AP2/ERF domain
PfamPF008472.8E-14110158IPR001471AP2/ERF domain
PRINTSPR003671.4E-10110121IPR001471AP2/ERF domain
PRINTSPR003671.4E-10132148IPR001471AP2/ERF domain
PfamPF031082.8E-5503533IPR004332Transposase, MuDR, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MAAAIDLSGE ELIRALEPFI RDASAPHVSH LSPTSPFSFP HAEYRGYPYG VQAQAQAQAQ  60
AELSPAQMHY IQARLHQRQT AQSVLGPRVH PMKAASSAAA ATPPRPQKLY RGVRQRHWGK  120
WVAEIRLPRN RTRLWLGTFD TAEEAALAYD QAAYRLRGDA ARLNFPHNAA SRGPLHASVD  180
AKLQALCQNI AASKNAKKSA SASAAATSST PSSNCSSPSS DEASSCLESA IAHPRHSRDG  240
DGAGDAAAGL QRGAVGRGRR LRPHQISDLF SCSSRFVVAR VGFLPESRFL NLRIEAELGV  300
CTISRFRDAD LVLVFFVGTH IGHPCAVEMN ILDKLVVRFH LNEEFINDGK VLHYCEGSER  360
LFYIERDKIS LPEITRHLGD HYEVLQGMLL HWLFPGKELV NGMRALVDDK ACQVMSNYVS  420
EGEIADIYVE TMPVEGESEE DDENGREDID FEEEINALTP DEESEDDDQL HDDEDSFSKE  480
GSDGATVRKK SIYPRFDSKA KVPNFSLGMK FRSKKQFKSA MIKYALAQRK DIQIGDGDGW  540
VIISNQQKGF LNAIVHWVPI AEHRMYWQLS GLPCCHAISC IFFGSKSVED FIDNCYSVEE  600
FNKTYEHCLQ PVDGMSVWPV SNKPKPKAPG YVKMPADNLS STHGMVTRGS QQSSTNLGKR  660
KTPAGTTNAS NSKRKCSGIE VLFSKRTGTI IQNPGMLNQR IIGASTKAKV TTKEGGSASC  720
TLNDRVPTSQ ANSRVTISLS SQASRSAIVH AQEPLRKSKE PTQKKSTNHV PHLLRPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20108166160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001123G0500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0955590.0FP095559.1 Phyllostachys edulis cDNA clone: bphylf038p14, full insert sequence.
GenBankFP0995750.0FP099575.1 Phyllostachys edulis cDNA clone: bphylf046e12, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-36ERF family protein