PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001120G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 409aa    MW: 44266.1 Da    PI: 5.0623
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001120G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  PH01001120G0010  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6*****************************657888889876 PP
2zf-B_box24.65.2e-084789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+++ ++++   C   ++ lC++C  ++H+       H++++
  PH01001120G0010 47 LCDRCASQPAMVRCLVENTSLCQNCDWNGHSAgssaagHKRQT 89
                     7*****************************6688899999876 PP
3CCT64.43.3e-22351394144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  PH01001120G0010 351 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 394
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
CDDcd000214.36E-8447No hitNo description
PROSITE profilePS501198.9024390IPR000315B-box-type zinc finger
PfamPF006431.5E-54790IPR000315B-box-type zinc finger
CDDcd000211.08E-54790No hitNo description
SMARTSM003360.284890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.477351393IPR010402CCT domain
PfamPF062035.7E-17351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENTSLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSA ELSRIWSFIL DIPNVTSEPN  120
CEQGISMMSI SDSGVSNQDN AAGDNSLLDI ASATLMSDLD TGDKHKSLIG SSSEAGVNLL  180
PLVTDQTAGS VDSTTAKVPY TPDKDMFSKD SIYEDFCVDD VDLTFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFEMKEVPAG NSDEQPKSMQ PAASNEVSAD SGMSNPGAKG DSSLRIPVRQ  300
ARSSISISFS GLTGESSAGD YQDCGVSSML LMGEPPWHPP GPEGSFAGAS RDSAITRYKE  360
KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD PLCQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KKKRR
2360365KKKRRK
3361365KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001120G0010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0988650.0AK098865.1 Oryza sativa Japonica Group cDNA clone:J013001A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644311.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-128COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3S6K5E00.0A0A3S6K5E0_DENLA; COLM
STRINGOGLUM06G12660.20.0(Oryza glumipatula)
STRINGORUFI06G12310.20.0(Oryza rufipogon)
STRINGOS06T0298200-010.0(Oryza sativa)
STRINGONIVA06G13380.10.0(Oryza nivara)
STRINGOBART06G11710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.17e-96B-box type zinc finger protein with CCT domain