PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001119G0470

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 363aa MW: 38414.6 Da PI: 5.309

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001119G0470	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.5	3.4e-14	171	223	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLee v++L eN++L +l ++++ PH01001119G0470 171 RLQRRKQSNRESARRSRGRKAAHLNELEEQVAQLRVENSSLLRRLADVNQKYN 223 679***************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-15	167	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.174	169	223	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-10	170	222	No hit	No description
SuperFamily	SSF57959	1.19E-9	171	221	No hit	No description
Pfam	PF00170	4.4E-11	171	222	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.48E-19	173	223	No hit	No description
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	9.9E-51	238	356	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MSRCPSEWYF QKFLEEAVLD SPGPIPSPRT DVSGRRGGGE AAEVRQPAAT SAVVDPVEYN 60 AMLKQKLEKD LAAVAMWRAT GAIPPDRSAA GSSLPSADVS HTGALNSIGG NMIPVQNKLS 120 GGPSGGSGPQ LVQNTDILVK QATGSSSRET DDDDMEGEAE ITGNANPGQQ RLQRRKQSNR 180 ESARRSRGRK AAHLNELEEQ VAQLRVENSS LLRRLADVNQ KYNASAVDNR VLKADVETLR 240 AKVKMAEDSV KRVTGMNALF PAVSDISSLS MPFNGSPSDA TSDAAVPIQD DPNNYFATTS 300 EVGGNNGYMP EIASSVQEDN DFVSEALVAG KIGRTASLQR VASLEHLQKK MCGGPTSSGS 360 TS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MSRCPSEWYF QKFLEEAVLD SPGPIPSPRT DVSGRRGGGE AAEVRQPAAT SAVVDPVEYN  60
AMLKQKLEKD LAAVAMWRAT GAIPPDRSAA GSSLPSADVS HTGALNSIGG NMIPVQNKLS  120
GGPSGGSGPQ LVQNTDILVK QATGSSSRET DDDDMEGEAE ITGNANPGQQ RLQRRKQSNR  180
ESARRSRGRK AAHLNELEEQ VAQLRVENSS LLRRLADVNQ KYNASAVDNR VLKADVETLR  240
AKVKMAEDSV KRVTGMNALF PAVSDISSLS MPFNGSPSDA TSDAAVPIQD DPNNYFATTS  300
EVGGNNGYMP EIASSVQEDN DFVSEALVAG KIGRTASLQR VASLEHLQKK MCGGPTSSGS  360
TS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001119G0470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981429.1	0.0	bZIP transcription factor RISBZ2 isoform X1
Refseq	XP_022679227.1	0.0	bZIP transcription factor RISBZ2 isoform X2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A0A9DSQ7	0.0	A0A0A9DSQ7_ARUDO; Ohp1
STRING	OPUNC03G34450.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	2e-43	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]