PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001099G0510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 223aa    MW: 24160.2 Da    PI: 8.496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001099G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-0865103947
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      d l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  PH01001099G0510  65 DRLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 103
                      67999*********************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.0E-540106IPR001005SANT/Myb domain
PROSITE profilePS500906.01742104IPR017877Myb-like domain
CDDcd001671.07E-743104No hitNo description
SuperFamilySSF466891.4E-1065108IPR009057Homeodomain-like
PfamPF002498.4E-665103IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.5E-1165106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.3E-765102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MESWMEVLPL PPAPYFAGQV GGWFLQDRRE GGVGVGVGVG GGAWTLEENK VFEEALARVD  60
RDVPDRLFLM GLKKYGRGDW RNISRNFVTS RTPTQVASHA QKYFIRLNSG GKDKRRSSIH  120
DITTVNLPDD DHSNPSPSPP SVLTANSTHS AAAPVISVQF SVLVDNKPPP PLGRGGHHHF  180
VPHPYGNVKL EASNPHAAGY HGGRLDDSVL MQMQCGQLQP LG*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001099G0510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947400.0FP094740.1 Phyllostachys edulis cDNA clone: bphylf046m24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654489.12e-91PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H74e-36DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLJ3M7R05e-90J3M7R0_ORYBR; Uncharacterized protein
STRINGOB05G26340.19e-91(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.17e-34Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]