PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001099G0510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 24160.2 Da PI: 8.496 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 65 | 103 | 9 | 47 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 d l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky PH01001099G0510 65 DRLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 103 67999*********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.0E-5 | 40 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.017 | 42 | 104 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.07E-7 | 43 | 104 | No hit | No description |
SuperFamily | SSF46689 | 1.4E-10 | 65 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.4E-6 | 65 | 103 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.5E-11 | 65 | 106 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.3E-7 | 65 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MESWMEVLPL PPAPYFAGQV GGWFLQDRRE GGVGVGVGVG GGAWTLEENK VFEEALARVD 60 RDVPDRLFLM GLKKYGRGDW RNISRNFVTS RTPTQVASHA QKYFIRLNSG GKDKRRSSIH 120 DITTVNLPDD DHSNPSPSPP SVLTANSTHS AAAPVISVQF SVLVDNKPPP PLGRGGHHHF 180 VPHPYGNVKL EASNPHAAGY HGGRLDDSVL MQMQCGQLQP LG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001099G0510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094740 | 0.0 | FP094740.1 Phyllostachys edulis cDNA clone: bphylf046m24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654489.1 | 2e-91 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-36 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | J3M7R0 | 5e-90 | J3M7R0_ORYBR; Uncharacterized protein | ||||
STRING | OB05G26340.1 | 9e-91 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 7e-34 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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