PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001091G0310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 383aa MW: 42280.5 Da PI: 10.4092 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 48.2 | 4.4e-15 | 1 | 139 | 1 | 113 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki........rernlalsekkaavaerd......................maflq 62 mdddgs rn+g++e ++nlglqlmss++ +rd+k+ +++ + + ++ +++rd m+f++ PH01001091G0310 1 MDDDGSLGiRNWGFFETP---ARNLGLQLMSSVPaDRDTKQllsnspflHHHGHQHMPHHPHHHPRDggvgggapsgiagmpaeapsmpMNFVR 91 9*****999*******99...78**********99******88888888444444566667778999*************************** PP GAGA_bind 63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113 +d +++ ++++rd+k+l+ l ++ +++l + +++k++++l+ PH01001091G0310 92 NDLWMHP---THHPRDSKMLHTLNADPRESKMLHTLNVDPRESKMLHTLNV 139 *******...99********9998776665444444444455555555555 PP | |||||||
2 | GAGA_bind | 313.6 | 6.5e-96 | 151 | 382 | 73 | 301 |
GAGA_bind 73 alverdnkllalllvensla.....salpvgvq.vlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160 + +r++k+l l++ ++ +++p+g++ +++gt+s+++lq++++p+ ++++ +++e+++ + iee++ +++e + +kkrq+ ++pk PH01001091G0310 151 HADPRESKMLCTLTAGHAGHvahaaHHEPAGYGmMIPGTHSAHTLQMMQQPEPQPPPP--PKQECMSPPLIEENVGVINEPPPPKKRQQRRQPK 242 5567899999888888877677888999999873589**********77766655555..599******************************* PP GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254 ++k kk+kk ++++++ ++++ +r++ +kk++++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+stkrrgaR PH01001091G0310 243 SPKPKKPKK-VAATREDRQPNGPAPRRRVPKKTVGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSTKRRGAR 335 *********.55777777777777********************************************************************** PP GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 iagrKmSqgafkk+LekLa+eGy+l+np+DLk+ WAkHGtnkfvtir PH01001091G0310 336 IAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTLWAKHGTNKFVTIR 382 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.9E-115 | 1 | 382 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.8E-174 | 1 | 382 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MDDDGSLGIR NWGFFETPAR NLGLQLMSSV PADRDTKQLL SNSPFLHHHG HQHMPHHPHH 60 HPRDGGVGGG APSGIAGMPA EAPSMPMNFV RNDLWMHPTH HPRDSKMLHT LNADPRESKM 120 LHTLNVDPRE SKMLHTLNVD PHESKMLHTL HADPRESKML CTLTAGHAGH VAHAAHHEPA 180 GYGMMIPGTH SAHTLQMMQQ PEPQPPPPPK QECMSPPLIE ENVGVINEPP PPKKRQQRRQ 240 PKSPKPKKPK KVAATREDRQ PNGPAPRRRV PKKTVGMVIN GIDLDLSRIP TPVCSCTGAP 300 QQCYRWGAGG WQSACCTTTV STYPLPMSTK RRGARIAGRK MSQGAFKKVL EKLAGEGYNL 360 NNPIDLKTLW AKHGTNKFVT IR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 245 | 251 | PKKPKKV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001091G0310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573749.1 | 1e-141 | barley B recombinant-like protein A | ||||
Swissprot | P0DH88 | 1e-136 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 1e-136 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0KCJ0 | 1e-144 | A0A0E0KCJ0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G13410.1 | 1e-145 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.3 | 3e-62 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|