PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001083G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 289aa    MW: 29821.1 Da    PI: 4.9652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001083G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-21101151256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g+
  PH01001083G0060 101 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEAAARAYDEAALRFRGN 151
                      8********.**********76....35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.35E-20100160No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32101159IPR001471AP2/ERF domain
SMARTSM003807.6E-36101164IPR001471AP2/ERF domain
PROSITE profilePS5103225.673101158IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22101159IPR016177DNA-binding domain
PfamPF008474.5E-14101150IPR001471AP2/ERF domain
PRINTSPR003676.1E-12102113IPR001471AP2/ERF domain
PRINTSPR003676.1E-12124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSVMVEALAR VVAGGAASTG AEEATVADLS PEGAWWGYGA ALPPSPSSSA AHECRAAMAA  60
GQYSPTAMAS PHEQLPSPSS ADTGAGSGSR GGRGRDAPRK RYRGVRQRPW GKWAAEIRDP  120
YKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEA VAVLPPIPPP LLPPGGTAML  180
PPEALLESQG MIGGEYSEYS RFLQGAGEPP HFFEEMVDAR QPAPVVTAAA ASSSSSFPVF  240
YSFGGGENDG GTNHLSPPES GAAGVGYPPA TWTDSGWLAP PAPWDPSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-23100161466ATERF1
3gcc_A8e-23100161466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001083G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032862e-68AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149572e-68AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-68CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.12e-50ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0MCV61e-66A0A0E0MCV6_ORYPU; Uncharacterized protein
STRINGOPUNC11G03940.12e-67(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110