PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001080G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 399aa    MW: 42948.9 Da    PI: 4.8949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001080G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20133182255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a + k++g
  PH01001080G0230 133 QYRGVRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEAHKIRG 182
                      6********.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.51E-32133191No hitNo description
SMARTSM003801.7E-37133196IPR001471AP2/ERF domain
PROSITE profilePS5103224.092133190IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-23133192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32133191IPR001471AP2/ERF domain
PRINTSPR003671.9E-11134145IPR001471AP2/ERF domain
PfamPF008478.5E-13134182IPR001471AP2/ERF domain
PRINTSPR003671.9E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MCGGAIISGF IPPAAAAAKK QQRRGTADVM WPGQRRGTAG RILGDEEEDF EADFREFERD  60
LSEDEADAGG DDDDVVEKVP PPPAPTPARF SFGAAAKAAA GVARSTVDDV PTPKLVQLDG  120
PAARSAKRNR KNQYRGVRQR PWGKWAAEIR DPSKGVRVWL GTYNTAEEAA RAYDAEAHKI  180
RGKKAKVNFP DEVPTAQRST PKPTAAKSAK LAPPTKTCDD EAFNHLNNAD NDLFAMFTFS  240
DKKVPAKPAE SVGFLPPVKP LVPTKTFGMN MLSDQSSNTF GSSDFGWDDE AMTPDYTSVL  300
VPNAAMPAYG ELSYLQGGAP KRLRNNYGVA VPQGNGTPNV TQDISGFDPE MKYMPPLHYV  360
ESSSDGSIDS LLQNDVTQDG ASNGCLWSLD ELLMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20133197570ATERF1
3gcc_A1e-20133197570ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001080G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943080.0FP094308.1 Phyllostachys edulis cDNA clone: bphyem211l02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660653.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGOB09G17960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-33related to AP2 12