PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001077G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 186aa    MW: 19610.9 Da    PI: 4.9501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001077G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-182171155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa a +aa  +l+g
  PH01001077G0020 21 KKYKGVRLRK-WGKWVSEIRLPNS---RERVWLGSYDTPEKAALAFDAAFICLRG 71
                     59******99.**********933...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-272183No hitNo description
SMARTSM003803.5E-312287IPR001471AP2/ERF domain
PfamPF008477.0E-112271IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-182282IPR016177DNA-binding domain
PROSITE profilePS5103220.8242281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-262282IPR001471AP2/ERF domain
PRINTSPR003676.9E-92334IPR001471AP2/ERF domain
PRINTSPR003676.9E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSSSPQPSTA SEDAEETPTQ KKYKGVRLRK WGKWVSEIRL PNSRERVWLG SYDTPEKAAL  60
AFDAAFICLR GPGAEGSINF PNSPPSVRCR SCDPQVVQAA ALSHANRVTA HEGAVDSAVL  120
MDVDSSTNAT AAWASQGLVV PDVDVGNEVV APVQADGSID WSPMMANPPP LFSPIGLGAT  180
RTGSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001077G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794487.14e-60ethylene-responsive transcription factor ERF017-like
SwissprotQ9S7L51e-34ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A1E5VKX32e-62A0A1E5VKX3_9POAL; Ethylene-responsive transcription factor ERF017
STRINGPavir.J00593.1.p4e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]