PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001075G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 257aa    MW: 27577.9 Da    PI: 10.2898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001075G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-214897255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae+Aa a+++a+++++g
  PH01001075G0390 48 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEDAAIAYDEAALRFKG 97
                     7********.**********93....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3347106IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2248106IPR016177DNA-binding domain
PfamPF008478.7E-144897IPR001471AP2/ERF domain
SMARTSM003807.3E-3748111IPR001471AP2/ERF domain
CDDcd000182.05E-3048106No hitNo description
PROSITE profilePS5103224.67148105IPR001471AP2/ERF domain
PRINTSPR003679.7E-124960IPR001471AP2/ERF domain
PRINTSPR003679.7E-127187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVSALAHVIR ASPDQQQPPQ QAFYPTAAST GEPQQLGHAA EEQGRRRHYR GVRQRPWGKW  60
AAEIRDPQKA ARVWLGTFDT AEDAAIAYDE AALRFKGTKA KLNFPERIQG RTDLGFLVTR  120
GIPDRHQHHY PAMAVPAMPG PMRPPQQQTF VPYPDLMQYA QLLQSGRGEA ARLMTMGAGG  180
AVNLPFGALS PSSSISSSSA PQILDFSTQQ LIRAGPRSPA AAMSGTAAPS TSSSTTTASS  240
SSAWPYGGEH KNNKDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2747109467ATERF1
3gcc_A5e-2747109467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001075G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-101EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191321.11e-101ethylene-responsive transcription factor ERF113-like
TrEMBLF2DWI61e-100F2DWI6_HORVV; Predicted protein
STRINGTraes_2DL_2536A1C8C.27e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-22ERF family protein