PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001071G0530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28262.5 Da PI: 10.7841 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 94 | 127 | 22 | 47 |
T.........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 g.........tWktIartmgkgRtlkqcksrwqky 47 + +W++Ia++++ gRt++++k++w+++ PH01001071G0530 94 RgrnieqvfiRWSLIAARLP-GRTDNEIKNYWNTH 127 05566666668*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.42E-7 | 102 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-13 | 103 | 129 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-7 | 103 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-7 | 104 | 127 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.562 | 104 | 128 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRARLRERC PVTPGGLNWL CPWARSSGGR RRANPSYARG GENGGRGCHF AQADAGAQKE 60 GGEKKSKIIA RRVQFFFQWA HGFALGTPKD TPRRGRNIEQ VFIRWSLIAA RLPGRTDNEI 120 KNYWNTHIRR KLLGRGIDPV THRPINDASN NVTISFHPQS PAQAPQPQPR EEDTKPLRCP 180 DLNLDLCISP PCQEDEVKPV RVLMKPLKRE LQGGLCFGCG LGLQKGAAAA ECKCSSNFLG 240 LRAGMLNFRT LEMK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001071G0530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358405 | 1e-54 | AK358405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075P05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822035.1 | 9e-63 | myb-related protein Zm38-like | ||||
Swissprot | P20025 | 3e-48 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A3L6PKZ8 | 7e-62 | A0A3L6PKZ8_PANMI; R2R3-MYB transcriptional factor PvMYB4d | ||||
STRING | TRIUR3_11068-P1 | 2e-58 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 6e-25 | myb domain protein 7 |
Publications ? help Back to Top | |||
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