PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001070G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 286aa    MW: 32535.7 Da    PI: 6.9229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001070G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.21.4e-17126190259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpkvveitYegeHnhe 59 
                       Dgy+WrKYGqK + +++++rsYYrC+ +   gC+++k v++ ++      +++++ Y g+H ++
  PH01001070G0240 126 YDGYQWRKYGQKWISKAKHSRSYYRCANSkaqGCRATKTVQQMEThgskSMRLFNVDYYGQHICK 190
                      59************************9887889********98751111557899*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-20112190IPR003657WRKY domain
SuperFamilySSF1182901.96E-18120191IPR003657WRKY domain
SMARTSM007742.0E-26125191IPR003657WRKY domain
PROSITE profilePS5081114.768127167IPR003657WRKY domain
PfamPF031066.8E-20127190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSILESFIHH GDRQPVINEI EHQMALMLEL RDTLQPILAK THDGLTMAVL RLIEDSLSSS  60
SKAISLLQLS GNDDKHGNLV GGKREGRKHG MEESHSNLGE ETRVTGNKRR KDTRHTGSLV  120
TQAPHYDGYQ WRKYGQKWIS KAKHSRSYYR CANSKAQGCR ATKTVQQMET HGSKSMRLFN  180
VDYYGQHICK RDDIVHPDVV DAAHRSVPPI NQNQCNAPMI VSEVHQVQDE SLENWFMVPD  240
MPEYLTDVEM ARVVEVAMNL PLDSEPWEFG DSLRCQQQSP LYIWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001070G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283251e-54KJ728325.1 Zea mays clone pUT6606 WRKY transcription factor (WRKY91) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.11e-114probable WRKY transcription factor 67
TrEMBLA0A0D3HHH41e-113A0A0D3HHH4_9ORYZ; Uncharacterized protein
TrEMBLI1R2M71e-113I1R2M7_ORYGL; Uncharacterized protein
STRINGORGLA11G0201900.11e-113(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-15WRKY DNA-binding protein 62