PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001063G0490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 641aa    MW: 71208.7 Da    PI: 4.4245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001063G0490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83.1e-5191421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+  +++evi+e+d++k+ePwdLp k  +++++ ew+f +++d+ky++g+r+nrat++gyWkatgkd+ +
  PH01001063G0490   9 LPLGFRFHPTDEELVRHYLKGKITGQIKPEDEVIPEIDVCKCEPWDLPdKsVIRSDDPEWFFIAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102
                      699************************99999***************96446677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  PH01001063G0490 103 KSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **976555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-573163IPR003441NAC domain
PROSITE profilePS5100556.299163IPR003441NAC domain
PfamPF023657.8E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKPEDE VIPEIDVCKC EPWDLPDKSV  60
IRSDDPEWFF IAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFDSG EQGGYVLYRL FKKQEEKNER SSPEEMDRSG  180
YSPTPSRSTP DNMEANEEAN TPLNKESPES TLHESPIDLP GPVETQDAPI TRWLADRTDN  240
LVTNEANISH MPPHGHVDGG AKVGPSVGSS AQLIDPQKEN VDAGEFATYA APMLPHEEEN  300
AFLSNFLLGP IGDFDGNMKS RDPLQDFLNQ TLVDPEEHSS TASKAQYDSD TAIMPTDGIM  360
QGDFVDDPNW LENLYFVPDD TNPQLSAYEN APFFPYDSTD QDVLSMDSGA DSGDAQRRLR  420
LQELLSANIE YGESMTRDEI EDEESGIVTS KYLDEAVEES TAEKDVPSDG DDAESTGITI  480
RSRRPALSSS SDSSFTQQGT AVGRLRLQLN LNAGPCPSVD GSSGCIIDEN ESEYKAEKAE  540
IEEHADTDFA ESAGLSGNRH DDEQKNMPEH DAAMLVPEAK SVLRLRKTAE ESSKENKQEG  600
GLDSHVRAPR KKGGFPSYII WLVLSVALIL LISVRIYGWV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44816416166NO APICAL MERISTEM PROTEIN
1ut4_B2e-44816416166NO APICAL MERISTEM PROTEIN
1ut7_A2e-44816416166NO APICAL MERISTEM PROTEIN
1ut7_B2e-44816416166NO APICAL MERISTEM PROTEIN
3swm_A2e-44816419169NAC domain-containing protein 19
3swm_B2e-44816419169NAC domain-containing protein 19
3swm_C2e-44816419169NAC domain-containing protein 19
3swm_D2e-44816419169NAC domain-containing protein 19
3swp_A2e-44816419169NAC domain-containing protein 19
3swp_B2e-44816419169NAC domain-containing protein 19
3swp_C2e-44816419169NAC domain-containing protein 19
3swp_D2e-44816419169NAC domain-containing protein 19
4dul_A2e-44816416166NAC domain-containing protein 19
4dul_B2e-44816416166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001063G0490
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0NAC domain-containing protein 14 isoform X2
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGOPUNC08G03310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-70NAC 014