PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001059G0500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 325aa MW: 34598.2 Da PI: 6.4391 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.8e-09 | 14 | 54 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRt 36 rg W++eEde+l + ++++G g+W++ ++ g ++R+ PH01001059G0500 14 RGLWSPEEDEKLMNHIAKYGHGSWSSMPKLAGtvprmLNRS 54 788***************************99877777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.946 | 9 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.3E-8 | 9 | 49 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-12 | 9 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 14 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-5 | 17 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAKRPSGTKK RLRRGLWSPE EDEKLMNHIA KYGHGSWSSM PKLAGTVPRM LNRSLDIPPS 60 NNVVSDCGAA AGTDGQRGQE LLELVHQEEA PPARHRPGHP QAARRGQQPR RRPAASRTAV 120 FSDAELILSS VGQQMPHMLP MVTAESYMYS RSSTDGGASA CSDGSLSLSG YNQTADFTGY 180 LDADALHCDP AASSTVHPAV IPSVSSSSTL NSMAGLSPAA TTTTTTNEQC KNHNSSSGGF 240 ESTHSSTTAT NHLPWLELGP SSACTDAAAA ADHYGAVLDE LKWSDYVFDG YQLQFQGIQG 300 QCIYGDSKDT VQFDAHGISN WCLN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001059G0500 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ477331 | 0.0 | KJ477331.1 Indosasa hispida MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154053.1 | 3e-84 | transcription factor MYB3-like | ||||
TrEMBL | A0A0D3Q1Y6 | 1e-159 | A0A0D3Q1Y6_9POAL; MYB transcription factor | ||||
STRING | Traes_2BS_E1E541767.1 | 2e-77 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 2e-14 | myb domain protein 50 |