PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001059G0500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 325aa    MW: 34598.2 Da    PI: 6.4391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001059G0500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-091454136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRt 36
                     rg W++eEde+l + ++++G g+W++ ++  g     ++R+
  PH01001059G0500 14 RGLWSPEEDEKLMNHIAKYGHGSWSSMPKLAGtvprmLNRS 54
                     788***************************99877777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.946955IPR017930Myb domain
SuperFamilySSF466893.3E-8949IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-12943IPR009057Homeodomain-like
PfamPF002492.1E-71452IPR001005SANT/Myb domain
CDDcd001671.69E-51746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKRPSGTKK RLRRGLWSPE EDEKLMNHIA KYGHGSWSSM PKLAGTVPRM LNRSLDIPPS  60
NNVVSDCGAA AGTDGQRGQE LLELVHQEEA PPARHRPGHP QAARRGQQPR RRPAASRTAV  120
FSDAELILSS VGQQMPHMLP MVTAESYMYS RSSTDGGASA CSDGSLSLSG YNQTADFTGY  180
LDADALHCDP AASSTVHPAV IPSVSSSSTL NSMAGLSPAA TTTTTTNEQC KNHNSSSGGF  240
ESTHSSTTAT NHLPWLELGP SSACTDAAAA ADHYGAVLDE LKWSDYVFDG YQLQFQGIQG  300
QCIYGDSKDT VQFDAHGISN WCLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001059G0500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4773310.0KJ477331.1 Indosasa hispida MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154053.13e-84transcription factor MYB3-like
TrEMBLA0A0D3Q1Y61e-159A0A0D3Q1Y6_9POAL; MYB transcription factor
STRINGTraes_2BS_E1E541767.12e-77(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.12e-14myb domain protein 50