PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001057G0620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 35958.9 Da PI: 4.323 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 119 | 169 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVrw++ +g ++AeIr ps+ r+r +lg+f+taeeAa ++a + kl+g+ PH01001057G0620 119 KFHGVRWRP-SGGYAAEIRNPSK---RTRSWLGTFDTAEEAAWKYDAEAIKLHGA 169 799******.7*********975...59*************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.7E-17 | 119 | 176 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.571 | 119 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-23 | 119 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-23 | 119 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.29E-24 | 119 | 175 | No hit | No description |
Pfam | PF00847 | 3.3E-8 | 119 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNSVQEEGLG ASITEVERME HDDVAVVQPP PPSPSLVKEV KPCAPVGKIV RIICEDKDAT 60 DSSGDETDSG DDGEVCPRGR RVRQCVHEIR LNESPVPGKV KSKAKARVEK VVGEGPSMKF 120 HGVRWRPSGG YAAEIRNPSK RTRSWLGTFD TAEEAAWKYD AEAIKLHGAG AITNFKQPAV 180 AAANASDAPL PAPPSKNGPS GGASYDSSEE SSHAAASHTS VLQSFPPSAI PASEPAMKPR 240 PSPPQPVPPP PPARPQETAE AGCSFQLEDI SGELDSIYGD LDDLINDFPE LPALDFLSDN 300 VLPELQLDDL GVGLSPTGTG WQQVDEFLND VDFTDLEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001057G0620 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | OGLUM01G08910.1 | 5e-47 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-21 | cytokinin response factor 4 |