PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001057G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 301aa    MW: 32128.6 Da    PI: 7.3884
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001057G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-16170219155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k ++lg f+ta  Aa+a+++ + k++g
  PH01001057G0460 170 SQYRGVTFYRRTGRWESHIWD------CgKPVYLGGFDTAHAAARAYDRVAIKFRG 219
                      78*******************......55***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-7170219IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-15170228IPR016177DNA-binding domain
SMARTSM003802.1E-28171233IPR001471AP2/ERF domain
CDDcd000182.53E-20171229No hitNo description
Gene3DG3DSA:3.30.730.104.1E-16171228IPR001471AP2/ERF domain
PROSITE profilePS5103216.647171227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MELDLNVAEG ASEKPAAMAR SDSGTSDSSV LNAEASGGGG ASAAPAEEGS SSTPPPPAVL  60
EFSILRSSAS AEGENDVGGA DDDEEAKPSP PRRQPQPQPQ QLVTRELFPV AAGPLRPVPQ  120
HWAELGLLRP EPPRPQPDIR ILPLQPPPPP PPAQTQAAKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKPVYLGGF DTAHAAARAY DRVAIKFRGV NADINFNLSD YEGRDEANEE  240
AYPRRSSCTS CDGRAPASRG AAPSTEASPC TSAADGRLAW ASSSARRLMI RLRSNAMVEK  300
P
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001057G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957360.0FP095736.1 Phyllostachys edulis cDNA clone: bphyem202e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.19e-78floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC37e-67AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0N7BW928e-92A0A0N7BW92_DENLA; Transcription factor AP2
STRINGTraes_1BS_E68807072.28e-77(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4130722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-27related to AP2.7