PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001046G0110

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C3H

Protein Properties

Length: 996aa MW: 109353 Da PI: 9.4502

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001046G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.7e-06	235	254	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+fa+ G C++G+ C+F H PH01001046G0110 235 PCRDFAA-GRCRRGSYCRFPH 254 7****.*********76 PP
2	zf-CCCH	21.7	3.5e-07	317	339	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 te C++f + G C++G++C++ H+ PH01001046G0110 317 TEQCHDFVK-GRCSRGASCRYVHD 339 899****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.23	232	256	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.15	235	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.525	314	341	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.023	314	340	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-5	317	340	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-5	317	339	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.018	374	401	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0039	375	400	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-6	375	399	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MTSEARKEGS KWDRKEGSPD IVEISEDEFL PMNTDDHCKD GDLLPSQDFT NGNGKQLGES 60 LNPKPDASMK QGSAGHEQER TDGFNKDVKE RQSKASSQRS QPPRIADEEH NNNDWGKSGL 120 GKATGNQGMS RYADDRRRGG DGWGTTLSRG YSSRMPSGPD AWRPGHSPSP SGVWDTSRRN 180 RSRSRSRSRS RSRSRSRSRS RGRRGRSRSR SPYFTDRGSE WRVERGRTSV VPALPCRDFA 240 AGRCRRGSYC RFPHEDGGRR QFDEHYPGDS RERYGHQPKE FMDSREPNDY LRSRQSRGHY 300 DKGTWERSEP RRDYRSTEQC HDFVKGRCSR GASCRYVHDD SASHAGWREE VRESAHGRGG 360 PDSSSYGTRT EHRRANKNPC KFFAERRCRR GQNCPYLHEE APQSQIGLGA PDEPLNYSDG 420 HTTRGNYSNW GEQTNATHAS SQILSRDDRE NPGSQGTGRS DSRYEYKNQH LKDAGRNQYQ 480 IFPQEDFGSQ GQNKPEVAAS QQPQFLNPIQ TSADSTSNDK VSGMDGQSAP AMTGNLSMQT 540 GIHAVDLIGG KILGQIARSE DAVPQIPGAP TLPVTTQLQN ATSSLPLNSQ PQQSNYSFLP 600 NRQDQFVVSQ AAANNSAPSM QSPPVAPYMG HNQHAYSRGA QALPDLSALN GRNFNVAGQF 660 PHNLPTTVNA VQSQATIDIP KPSQPDLSAL NGRNFNVAGQ FPQNLPTTVN AAQSQATIDI 720 PKPSQDSGTQ SIQHTHNFQP VTPNVQNQSQ ILQGLSVVPS SSSVDMVGAP VSHNAATNVD 780 VSRVAASLAQ YFGNAAATAG TVGLQSSQPN LNSSLMITSS TAPPAVQPNP WPWAQQQAGM 840 VQPVPSVPSE QQAPQTFQVP MAVGSSNGNP VLLPRLVAPT GHAVTSVVNE TVPSENKKGE 900 PKDTDAEAHE DDENKKSKDS KALKLFKLAL ADFVKDALKP TWKEGQLSRE VHKTIVKKVV 960 DKVTSTVDNV PQTKEKIDIY MSYSREKLNK LVQVT*

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MTSEARKEGS KWDRKEGSPD IVEISEDEFL PMNTDDHCKD GDLLPSQDFT NGNGKQLGES  60
LNPKPDASMK QGSAGHEQER TDGFNKDVKE RQSKASSQRS QPPRIADEEH NNNDWGKSGL  120
GKATGNQGMS RYADDRRRGG DGWGTTLSRG YSSRMPSGPD AWRPGHSPSP SGVWDTSRRN  180
RSRSRSRSRS RSRSRSRSRS RGRRGRSRSR SPYFTDRGSE WRVERGRTSV VPALPCRDFA  240
AGRCRRGSYC RFPHEDGGRR QFDEHYPGDS RERYGHQPKE FMDSREPNDY LRSRQSRGHY  300
DKGTWERSEP RRDYRSTEQC HDFVKGRCSR GASCRYVHDD SASHAGWREE VRESAHGRGG  360
PDSSSYGTRT EHRRANKNPC KFFAERRCRR GQNCPYLHEE APQSQIGLGA PDEPLNYSDG  420
HTTRGNYSNW GEQTNATHAS SQILSRDDRE NPGSQGTGRS DSRYEYKNQH LKDAGRNQYQ  480
IFPQEDFGSQ GQNKPEVAAS QQPQFLNPIQ TSADSTSNDK VSGMDGQSAP AMTGNLSMQT  540
GIHAVDLIGG KILGQIARSE DAVPQIPGAP TLPVTTQLQN ATSSLPLNSQ PQQSNYSFLP  600
NRQDQFVVSQ AAANNSAPSM QSPPVAPYMG HNQHAYSRGA QALPDLSALN GRNFNVAGQF  660
PHNLPTTVNA VQSQATIDIP KPSQPDLSAL NGRNFNVAGQ FPQNLPTTVN AAQSQATIDI  720
PKPSQDSGTQ SIQHTHNFQP VTPNVQNQSQ ILQGLSVVPS SSSVDMVGAP VSHNAATNVD  780
VSRVAASLAQ YFGNAAATAG TVGLQSSQPN LNSSLMITSS TAPPAVQPNP WPWAQQQAGM  840
VQPVPSVPSE QQAPQTFQVP MAVGSSNGNP VLLPRLVAPT GHAVTSVVNE TVPSENKKGE  900
PKDTDAEAHE DDENKKSKDS KALKLFKLAL ADFVKDALKP TWKEGQLSRE VHKTIVKKVV  960
DKVTSTVDNV PQTKEKIDIY MSYSREKLNK LVQVT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	202	RSRSRSRSRGR
2	194	202	RSRSRSRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001046G0110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010234284.1	0.0	zinc finger CCCH domain-containing protein 55
Refseq	XP_010234285.1	0.0	zinc finger CCCH domain-containing protein 55
Refseq	XP_010234286.1	0.0	zinc finger CCCH domain-containing protein 55
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	I1I0R9	0.0	I1I0R9_BRADI; Uncharacterized protein
STRING	BRADI3G14480.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]