PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001046G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 593aa    MW: 63978.9 Da    PI: 6.3466
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001046G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.4e-21109164156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PH01001046G0030 109 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 164
                      688999***********************************************999 PP
2START94.61.9e-302353718127
                      HHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
            START   8 qelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                      ++++    a++p+W      e +n++e+ + f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tlev+s+g  
  PH01001046G0030 235 AAKYVGKPAGAPLWAPALdgEALNEEEYARAFPRGIGpksleLRSEASRETAVVIMNHVSLVEMLMDVG-QWSALFSsivsRASTLEVLSTGva 327
                      5556666678999999998899************999********************************.99999999999************* PP

                      ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEE CS
            START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivd 127
                          galqlm+ae+q++splvp R++ f+Ry++q+++g+w++vd
  PH01001046G0030 328 gnhnGALQLMSAEFQMPSPLVPtRESQFLRYCKQHPDGTWAVVD 371
                      *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2394150IPR009057Homeodomain-like
SuperFamilySSF466891.92E-2096166IPR009057Homeodomain-like
PROSITE profilePS5007117.394106166IPR001356Homeobox domain
SMARTSM003891.9E-20107170IPR001356Homeobox domain
CDDcd000864.02E-20108167No hitNo description
PfamPF000461.7E-18109164IPR001356Homeobox domain
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.607.7E-4151194IPR009057Homeodomain-like
SMARTSM002342.3E-18228454IPR002913START domain
PfamPF018528.7E-23244371IPR002913START domain
PROSITE profilePS5084815.317246371IPR002913START domain
SuperFamilySSF559611.51E-11281371No hitNo description
SuperFamilySSF559611.0E-17373576No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSPAIIGRNG GIAYASSSSA LSLGQNLGHP HQLPAMLQQH HGQPQQLVDQ HHLPQHHHQQ  60
QAATSESDAR GPRGGSNADE LEMSKSGGSD NLEGGGSGEE QDPNQRPRKK RYHRHTQHQI  120
QELEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERQ ENTALRTENE  180
KLRAENMRYK EALANASCPN CGGPAAIGEM SFDEHHLRLE NARLRDEIDR ISAIAAKYVG  240
KPAGAPLWAP ALDGEALNEE EYARAFPRGI GPKSLELRSE ASRETAVVIM NHVSLVEMLM  300
DVGQWSALFS SIVSRASTLE VLSTGVAGNH NGALQLMSAE FQMPSPLVPT RESQFLRYCK  360
QHPDGTWAVV DGRRSMLKLA ERMVASFCGG VTASTTHQWT TLSGSGAEDV RVMTRKSVDD  420
PGRPPGIILN AATSFWLPVL PARVFDFLRD DSTRSEWDIL SNGGVQNANS NQSNMLILQE  480
CCTDATGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGSAGAA AAAEAGGSLL  540
TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAVA GENGVAPAAC AR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001046G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695486.10.0PREDICTED: homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLJ3MQ680.0J3MQ68_ORYBR; Uncharacterized protein
STRINGOB08G12470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.31e-108homeodomain GLABROUS 2