PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001026G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 745aa    MW: 81065.6 Da    PI: 7.6415
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001026G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.4e-24153254199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  ++
  PH01001026G0300 153 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFM--RT 242
                      89****************************996555555..8999*********************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  PH01001026G0300 243 ENGDLCVGIRRA 254
                      88999****997 PP
2Auxin_resp116.42.4e-38310393183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  PH01001026G0300 310 AANLAVSGQPFEVVYCPRASTPEFCVKAGAVRAAMRTQWCPGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 393
                      688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-37145256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-28149255IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-21152253No hitNo description
PfamPF023623.5E-22153254IPR003340B3 DNA binding domain
SMARTSM010193.8E-21153255IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985153255IPR003340B3 DNA binding domain
PfamPF065074.5E-32310393IPR010525Auxin response factor
PROSITE profilePS5174522.691629709IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MERERENDKC LDPQLWHACA GGMWKVVVKM ITFVDSAAME RERENDKCLD PQLWHACAGG  60
MVQMPPVGSK VYYFPQGHAE HAQGQGPVEF PAGHVPALVL CRVAGVRFLA DPDTDEVFAK  120
IRLVPVRPHD PGYAGDADDG IGAAAQEEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP  180
RLDYSADPPV QTVLAKDVHG VVWKFRHIYR GTPRRHLLTT GWSAFVNQKK LVAGDSIVFM  240
RTENGDLCVG IRRAKKGGVG GPELLPPPPL AGGNYGGFSM FLRGEEDSNK MMVARANVRV  300
RVRPEEVVEA ANLAVSGQPF EVVYCPRAST PEFCVKAGAV RAAMRTQWCP GMRFKMAFET  360
EDSSRISWFM GTVSAVQVAD PIRWPNSPWR LLQVTWDEPD FLQNVKRVSP WLVELVSNMP  420
AIHLAPFSPP RKKLCVPLYP ELGQFPAPMF HGSPLGRGVG PMCYFPDGTP AGIQGARHAQ  480
FGISLSDLHL NKLQSSLSPH GLYQLDHSTQ PRIAAGLIIG HPAARDDISC LLTIGTPQNN  540
KNSDVKKAAP QLMLFGKPIL TEQQISLGNS GAFPPAAARK SPSDGNTEKT ANNSDLSSPR  600
NNQNGTTENL SCGGVPLCQD KVFDLGLETG HCKVFLQSED VGRSLDLSVV GSYEELYQQL  660
ADMFGIEKAE LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLTILADTSS GSLARKDKNC  720
GLGLAKKCTL PFHVTLLANL KDGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-794941451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001026G0300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1003220.0AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644137.10.0auxin response factor 18
RefseqXP_015644138.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0D3GK330.0A0A0D3GK33_9ORYZ; Auxin response factor
TrEMBLI1Q4N20.0I1Q4N2_ORYGL; Auxin response factor
STRINGORGLA06G0209500.10.0(Oryza glaberrima)
STRINGOBART06G25230.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]