PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001022G0490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27279.3 Da PI: 8.2137 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl PH01001022G0490 14 RGAWTSEEDDTLASYIKAHGEGKWREVPQRTGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w++ PH01001022G0490 67 RGNISDDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.704 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.80E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.285 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRRACCAKE GVKRGAWTSE EDDTLASYIK AHGEGKWREV PQRTGLRRCG KSCRLRWLNY 60 LRPNIKRGNI SDDEEDLIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNS TLGRKAGGGG 120 GTRVRTLDGA SQATDGAAAL SSSEPGQAAP RADPNAGAAG RTALSSALWA PKAVRSTGGL 180 FFHRETLPPL AEAQTGGVDG DDSSGSSPAT SAFPAPEPFL SGGGDWMDDV RALASFLESD 240 EDWVRCQMAE PRVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001022G0490 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY135019 | 1e-121 | AY135019.1 Zea mays PL transcription factor (pl) mRNA, pl-W22 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812125.1 | 1e-103 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 3e-91 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A1E5WII7 | 1e-110 | A0A1E5WII7_9POAL; Anthocyanin regulatory C1 protein | ||||
STRING | OB06G16110.1 | 2e-99 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-58 | myb domain protein 7 |